Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01146 ATGGCGTCTAACCCTCTCGAAATCTGCGTCAAGGCCTCCGTCACTTTGCCCAATAAGCTCGGTGATTGTCCCTTCTGCCAAAGGGTACTGCTAACCTTGGAGGAAAAACATTTACCTTACGACATGAAGTTGGTAGATTTTACTAACAAGCCAGAATGGTTCCTAGAAATTAATGCAGATGGAAAAGTTCCCGTCATCAAACTCGAAGAAAAGCGGATTGCAGATTCAGATGTTATAACACAATTGCTCGAAGAGAAATACCCAAATCCACCATTGGCTACTCCACCTGCAAAGTCTTCAGTTGGGTCAAAGATCTTTTCCACCTTTATTGGTTTTCTCAAAAGCAAAGACTCCGCCGATGGAACAGAACAAGCTTTGCTAAGTGAGCTAAGTTCCTTCAATGATTATATCAAAGAGAATGGTCCTTTCATAAACGGCCAAGAGGTATCGGCTGCAGACTTGTCTCTCGGACCGAAGTTGTATCATCTCGAAATTGCATTATCACACTATAAGAATTGGTCGATTCCGGACACCATACCTTATGTGAAGTCTTACACGAAGGTATGTCTGGTGCAAAACAAACATTTAATTGACTGCAATATGTTTGGAATTTTCTTCCAAACACTTTGA 630 41.59 MASNPLEICVKASVTLPNKLGDCPFCQRVLLTLEEKHLPYDMKLVDFTNKPEWFLEINADGKVPVIKLEEKRIADSDVITQLLEEKYPNPPLATPPAKSSVGSKIFSTFIGFLKSKDSADGTEQALLSELSSFNDYIKENGPFINGQEVSAADLSLGPKLYHLEIALSHYKNWSIPDTIPYVKSYTKVCLVQNKHLIDCNMFGIFFQTL 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46521257 46523147 - Bda003344.1 Bda01g01146 1146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01146 209 CDD GST_N_family 23 84 - -
Bda01g01146 209 Gene3D Glutaredoxin 5 92 - -
Bda01g01146 209 SUPERFAMILY GST C-terminal domain-like 86 189 IPR036282 -
Bda01g01146 209 SFLD Main (cytGST) 22 188 - -
Bda01g01146 209 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 3 190 IPR044627 GO:0033355|GO:0045174|GO:0098869
Bda01g01146 209 PANTHER GLUTATHIONE S-TRANSFERASE DHAR3, CHLOROPLASTIC 3 190 - -
Bda01g01146 209 Coils Coil 209 209 - -
Bda01g01146 209 SFLD Glutathione Transferase (cytosolic) 22 188 IPR040079 -
Bda01g01146 209 SUPERFAMILY Thioredoxin-like 21 90 IPR036249 -
Bda01g01146 209 Gene3D - 93 200 - -
Bda01g01146 209 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 13 91 IPR004045 -
Bda01g01146 209 Pfam Glutathione S-transferase, N-terminal domain 22 91 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01146 K21888 DHAR; glutathione dehydrogenase/transferase [EC:1.8.5.1 2.5.1.18] - csv:101203335 326.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01146 Bda-Chr1:46521257 Bda15g00369 Bda-Chr15:6550934 3.19E-70 dispersed
Bda01g01146 Bda-Chr1:46521257 Bda14g00316 Bda-Chr14:2141060 2.60E-75 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda04g00604 . 1 209 Glutathione S-transferase Gene Family AT4G02520 56.6 2.7e-62 235.3
Bda04g00604 . 1 210 Glutathione S-transferase Gene Family AT2G02930 56.3 1.2e-62 236.5
Bda04g00604 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.8e-57 219.5
Bda04g00604 . 1 210 Glutathione S-transferase Gene Family AT1G02930 54.8 2.1e-59 225.7
Bda04g00604 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.3 5.5e-60 227.6
Bda04g00604 . 1 213 Glutathione S-transferase Gene Family AT2G47730 57.5 8.4e-66 247.3
Bda07g01101 . 1 212 Glutathione S-transferase Gene Family AT3G03190 58.0 3.2e-71 265.0
Bda07g01101 . 1 214 Glutathione S-transferase Gene Family AT5G17220 59.3 1.7e-72 269.2
Bda01g00194 . 19 232 Glutathione S-transferase Gene Family AT3G09270 58.6 3.0e-72 268.5
Bda01g00187 . 3 213 Glutathione S-transferase Gene Family AT3G09270 59.0 3.9e-72 268.1
Bda03g00799 . 200 410 Glutathione S-transferase Gene Family AT3G09270 58.0 6.3e-70 260.8
Bda05g00801 . 2 222 Glutathione S-transferase Gene Family AT1G78380 65.2 5.2e-85 310.8
Bda12g00808 BCT 1 211 Glutathione S-transferase Gene Family AT1G78380 67.3 1.1e-84 309.7
Bda12g00804 . 1 209 Glutathione S-transferase Gene Family AT1G78380 66.5 2.0e-84 308.9
Bda12g00805 . 211 417 Glutathione S-transferase Gene Family AT1G78380 66.2 7.4e-84 307.0
Bda12g00806 . 1 231 Glutathione S-transferase Gene Family AT1G78380 59.7 3.8e-80 294.7
Bda12g00805 . 214 420 Glutathione S-transferase Gene Family AT1G78370 64.7 1.0e-80 296.6
Bda05g00801 . 2 220 Glutathione S-transferase Gene Family AT1G78370 62.1 3.2e-79 291.6
Bda12g00808 BCT 1 211 Glutathione S-transferase Gene Family AT1G78370 62.6 2.1e-78 288.9
Bda12g00804 . 6 212 Glutathione S-transferase Gene Family AT1G78370 62.8 2.7e-78 288.5
Bda12g00806 . 1 231 Glutathione S-transferase Gene Family AT1G78370 56.7 4.8e-75 277.7
Bda12g00804 . 1 211 Glutathione S-transferase Gene Family AT1G78340 64.5 5.3e-82 300.8
Bda05g00801 . 2 222 Glutathione S-transferase Gene Family AT1G78340 61.5 1.7e-80 295.8
Bda12g00808 BCT 1 208 Glutathione S-transferase Gene Family AT1G78340 64.4 1.7e-80 295.8
Bda12g00805 . 211 419 Glutathione S-transferase Gene Family AT1G78340 62.7 2.5e-79 292.0
Bda12g00806 . 1 230 Glutathione S-transferase Gene Family AT1G78340 58.3 1.5e-76 282.7
Bda12g00804 . 1 205 Glutathione S-transferase Gene Family AT1G78320 53.2 3.6e-58 221.5
Bda12g00805 . 210 413 Glutathione S-transferase Gene Family AT1G78320 53.4 8.1e-58 220.3
Bda12g00808 BCT 1 212 Glutathione S-transferase Gene Family AT1G78320 50.9 3.1e-57 218.4
Bda05g00801 . 2 220 Glutathione S-transferase Gene Family AT1G78320 50.2 8.9e-57 216.9
Bda05g00801 . 2 225 Glutathione S-transferase Gene Family AT1G17180 63.4 1.4e-85 312.8
Bda12g00804 . 1 209 Glutathione S-transferase Gene Family AT1G17180 63.2 6.4e-83 303.9
Bda12g00808 BCT 1 211 Glutathione S-transferase Gene Family AT1G17180 63.0 1.8e-82 302.4
Bda12g00805 . 1 214 Glutathione S-transferase Gene Family AT1G17180 61.7 3.2e-82 301.6
Bda12g00806 . 1 234 Glutathione S-transferase Gene Family AT1G17180 56.8 4.3e-79 291.2
Bda12g00804 . 2 215 Glutathione S-transferase Gene Family AT1G17190 58.3 1.6e-73 272.7
Bda12g00808 BCT 3 209 Glutathione S-transferase Gene Family AT1G17190 57.5 1.3e-72 269.6
Bda12g00805 . 210 417 Glutathione S-transferase Gene Family AT1G17190 56.3 2.9e-72 268.5
Bda05g00801 . 4 223 Glutathione S-transferase Gene Family AT1G17190 55.0 3.8e-72 268.1
Bda12g00806 . 3 230 Glutathione S-transferase Gene Family AT1G17190 51.3 5.2e-69 257.7
Bda12g00804 . 2 211 Glutathione S-transferase Gene Family AT3G43800 52.3 6.1e-65 244.2
Bda12g00805 . 209 419 Glutathione S-transferase Gene Family AT3G43800 50.7 2.6e-63 238.8
Bda12g00808 BCT 3 211 Glutathione S-transferase Gene Family AT3G43800 53.5 9.8e-63 236.9
Bda05g00801 . 4 220 Glutathione S-transferase Gene Family AT3G43800 50.2 2.7e-60 228.8
Bda05g00801 . 5 225 Glutathione S-transferase Gene Family AT1G53680 55.4 9.7e-71 263.5
Bda12g00805 . 209 419 Glutathione S-transferase Gene Family AT1G53680 58.2 2.8e-70 261.9
Bda12g00804 . 2 211 Glutathione S-transferase Gene Family AT1G53680 56.6 1.5e-68 256.1
Bda12g00808 BCT 4 205 Glutathione S-transferase Gene Family AT1G53680 60.8 2.6e-68 255.4
Bda12g00806 . 4 234 Glutathione S-transferase Gene Family AT1G53680 53.4 8.5e-67 250.4
Bda11g00278 . 16 154 Glutathione S-transferase Gene Family AT2G02380 51.8 1.4e-37 153.3
Bda08g00522 . 1 244 Glutathione S-transferase Gene Family AT5G41210 67.6 7.3e-96 347.1
Bda08g00522 . 1 244 Glutathione S-transferase Gene Family AT5G41240 67.2 4.8e-93 339.0
Bda15g00189 . 247 426 Glutathione S-transferase Gene Family AT5G02780 59.9 2.6e-58 222.2
Bda05g01248 . 2 142 Glutathione S-transferase Gene Family AT5G02780 58.7 4.9e-41 164.9
Bda15g00189 . 247 428 Glutathione S-transferase Gene Family AT3G55040 65.0 1.0e-64 243.8
Bda05g01248 . 1 147 Glutathione S-transferase Gene Family AT3G55040 56.8 7.2e-42 167.9
Bda15g00189 . 247 430 Glutathione S-transferase Gene Family AT5G02790 62.7 3.7e-65 245.0
Bda05g01248 . 1 143 Glutathione S-transferase Gene Family AT5G02790 57.6 2.2e-41 166.0
Bda15g00369 . 1 211 Glutathione S-transferase Gene Family AT1G19570 65.6 3.6e-83 304.7
Bda14g00316 . 1 211 Glutathione S-transferase Gene Family AT1G19570 66.5 2.3e-82 302.0
Bda01g01146 . 6 187 Glutathione S-transferase Gene Family AT1G19570 59.6 1.3e-61 233.0
Bda15g00369 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 1.7e-85 312.4
Bda14g00316 . 1 212 Glutathione S-transferase Gene Family AT1G75270 69.0 6.5e-85 310.5
Bda01g01146 . 6 187 Glutathione S-transferase Gene Family AT1G75270 59.6 1.2e-62 236.5
Bda01g01146 . 2 185 Glutathione S-transferase Gene Family AT5G16710 76.6 1.2e-85 313.2
Bda15g00369 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.6 1.2e-72 270.0
Bda14g00316 . 3 210 Glutathione S-transferase Gene Family AT5G16710 55.3 6.7e-68 254.2
Bda01g00677 . 1 268 Glutathione S-transferase Gene Family AT1G77290 66.9 3.3e-102 368.2
Bda06g00110 . 1 260 Glutathione S-transferase Gene Family AT1G77290 62.8 1.9e-94 342.4
Bda06g00111 . 1 260 Glutathione S-transferase Gene Family AT1G77290 62.8 1.9e-94 342.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010539 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01146 Bda_Chr01 FPKM 2.99458 4.625009 3.240878 3.070755 4.732257 4.235038 4.711547 0.0 0.0