Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01171 ATGCGGATGAGCTGCAATGGATGCAGAGTCCTGCGTAAAGGCTGCAGTGAGAATTGTAGTATTAGGCCTTGCTTGCAGTGGATCAAGAGCCATGATTCTCAGGCCAACGCTACTGTTTTCCTCGCCAAGTTCTATGGCCGTGCTGGCCTCATGAACCTCATCAACGCTGGCCCTGATCACCTCCGCCCTGCTATTTTTAGGTCTTTGTTGTACGAGGCGTGTGGGAGGATTGTTAACCCGATTTATGGATCCGTCGGCTTGCTGTGGTCCGGAAGCTGGCAACTCTGCCAGGACGCTGTTGAGGCCGTCCTGAAAGGAGCTCCGATCATTCCGATTACCTCTGAAGCAGCGGCTAACGGCCATGGACCGCCACTTAAGCCATACGACATCCGACACGTTGCGAAGGATGAGAACTCCATGGCGTCTGATCGACTCCGGCAAGTAAAGACTCGCACTCGTCACAATCGATCCGTCGGAAAGCCGAAGTCGAGCAAGAATTCTCCGATCGATTGCGTGGTCAATCCGGCTGGCGCTGTCTTATCCGATGCGATGAACAGGTCCACGAGTCACGAATCGTCGCTGAGTCAGCAGTCCGAGGCGCCGAACATTGAAAACGAGAGCAAGGAATCGGAGAGCATCGTCTCCATGGAGACTGCCGAGCCCTCGGCGCCGGTAATGATCCGATCAGAAACAGAATCCTTCCAGAAACGTAGGCACAAAGTAACAGAGGAAGTAGACATAGCCCTGGAGCTGACCTTAGGGCTGAAGCCGCCGCCGGTGTCACGTGCGGAGCAGGTGGTTCCTGTGAAGAAGCGAAAAGTCGACTCGAACAGTAGATCGCTCATCGGCGCCTGTAAGACAGAACTGGGCCTGGAATTTCCGGCATGA 888 54.73 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSHDSQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQDAVEAVLKGAPIIPITSEAAANGHGPPLKPYDIRHVAKDENSMASDRLRQVKTRTRHNRSVGKPKSSKNSPIDCVVNPAGAVLSDAMNRSTSHESSLSQQSEAPNIENESKESESIVSMETAEPSAPVMIRSETESFQKRRHKVTEEVDIALELTLGLKPPPVSRAEQVVPVKKRKVDSNSRSLIGACKTELGLEFPA 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 46897207 46898177 + Bda003373.2 Bda01g01171 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01171 295 MobiDBLite consensus disorder prediction 184 223 - -
Bda01g01171 295 MobiDBLite consensus disorder prediction 184 203 - -
Bda01g01171 295 MobiDBLite consensus disorder prediction 136 171 - -
Bda01g01171 295 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 292 - -
Bda01g01171 295 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 292 - -
Bda01g01171 295 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Bda01g01171 295 PIRSF AS2 1 293 IPR017414 -
Bda01g01171 295 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01171 Bda-Chr1:46897207 Bda11g01472 Bda-Chr11:21231420 1.44E-54 dispersed
Bda01g01171 Bda-Chr1:46897207 Bda13g01768 Bda-Chr13:40996293 4.00E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15425 PF03195 LOB 1.90E-23 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01171 - - zju:107416542 376.711