Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g01195 | ATGGGTTCAGTTTGCTGCTGCATGAATGCTGACGAAATTGAAAATTTTGTGAACTCAAATGGATCTGTTCATAGGAATTGCGCATGTCTTGGTTGCTTCGTCCAAAACTTTTTAAATGTGTATACATCATTATTTCGAAGAGGAGAAATGCATGCTATTTCTTCATCAGTTCAAGGGGCAGCATCTATGGCTTCTACAGCATCATACGACAACTCTATGCCCGATATGTATCATTCTCCTCCAAGGCCGTTGCCGTATGATGCTGACCCTAGATATATCCGCATACCGAGAGATGGTCTAGTTTCGAGGCGTGATAAGGGCTCAAGTCACCTTCATGAAGAATCAGAACCTCTGAGAAGTGATGTTGATAGGGCCGAAGAATCATTAAGTGGAGTGGACAAACTGGATTCTGAAGATGAATCTAAAGAGCACATTTATAAATCCTCTCTCAAGATCTCTTCAGTAAAAGCAACAATTGGAGCTGAAAATGTTTATATGCCATCTGAAGATGAGGATGTTTGTCCAACATGCCTGGAAGATTATACACGAGAGAATCCAAAGATAACAACCAAATGTGCACATCATTTCCACCTCGGGTGCATCTACGAGTGGATGGAGAGAAGTGACAGCTGTCCTGTCTGTGGCAAGGTATCCTCAACTATTCCTCGTGTTTATAGGCTAAATAATGACTTTATAGTTTTATTAATTCAGTTCATTAGTCTACTCAGTTGCTTCACTGATTTTATTTTATTATCAGTATTTTAA | 765 | 39.74 | MGSVCCCMNADEIENFVNSNGSVHRNCACLGCFVQNFLNVYTSLFRRGEMHAISSSVQGAASMASTASYDNSMPDMYHSPPRPLPYDADPRYIRIPRDGLVSRRDKGSSHLHEESEPLRSDVDRAEESLSGVDKLDSEDESKEHIYKSSLKISSVKATIGAENVYMPSEDEDVCPTCLEDYTRENPKITTKCAHHFHLGCIYEWMERSDSCPVCGKVSSTIPRVYRLNNDFIVLLIQFISLLSCFTDFILLSVF | 254 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 47220769 | 47223209 | + | Bda003400.1 | Bda01g01195 | 1195 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g01195 | 254 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 231 | IPR013083 | - | |
| Bda01g01195 | 254 | ProSiteProfiles | Zinc finger RING-type profile. | 174 | 214 | IPR001841 | - | |
| Bda01g01195 | 254 | SMART | ring_2 | 174 | 214 | IPR001841 | - | |
| Bda01g01195 | 254 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 218 | - | - | |
| Bda01g01195 | 254 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 218 | - | - | |
| Bda01g01195 | 254 | MobiDBLite | consensus disorder prediction | 103 | 140 | - | - | |
| Bda01g01195 | 254 | Pfam | Ring finger domain | 173 | 214 | IPR001841 | - | |
| Bda01g01195 | 254 | SUPERFAMILY | RING/U-box | 168 | 222 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g01195 | Bda-Chr1:47220769 | Bda07g01037 | Bda-Chr7:12219786 | 2.66E-105 | dispersed | |
| Bda06g00115 | Bda-Chr6:1843111 | Bda01g01195 | Bda-Chr1:47220769 | 8.45E-30 | transposed | |
| Bda07g00483 | Bda-Chr7:6067217 | Bda01g01195 | Bda-Chr1:47220769 | 7.01E-27 | transposed | |
| Bda01g01195 | Bda-Chr1:47220769 | Bda12g00210 | Bda-Chr12:2055104 | 1.67E-105 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g01195 | - | - | zju:107416681 | 340.117 |