Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01197 ATGGGGAGAGGAAGAGTTGAACTGAAGAGGATAGAAAACAAGATAAACAGGCAGGTTACGTTTGCAAAGAGGAGAAATGGGCTTTTTAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCCAATCGTGGCAAGCTCTATGAATTCTGCAGCAGCTCTAATAGCATGCTTAAAACCCTGGAAAGGTACCAAAAATGTAGCTATGGTGCTGTGGAAGTCAACAGGCCATGCAAGGAACTTGAGCAGAGCAGCTACAGAGAGTATTTGAAGTTAAAATCCAGATTTGAGTCCCTACAAAGAACTCAAAGAAATCTGCTAGGAGAAGAATTGGGTCCATTGAACTCGGAAGAGCTTGAACAGCTTGAGCATCAGCTGGAGGCATCCCTAACGCAAGTCAGATCCACCAAGACCCAGTACATGCTTGATCAGCTGTCTGATCTTCAAACCAAGGAACAAATGCTGATTGAAGCTAACAGAGCTTTGACTATAAAGCTCGATGAAATCAGCTCGAGAAATCACCTCAGGCAAGCTTGGGAAGCTGGGGAGCAAAACATATCATATGGCCCGCAGAATGCTCAAACTCAAGGATTCTTCCAGCCTCTGGACTGCAATCCCACTTTGCAAATTGGATACAGTGGAGCCGATGAGATGGCTGCAACTGGATCAGCTCACGGCCAGCAAGTCACTGGATTCATACCTGGATGGATGCTTTGA 738 45.39 MGRGRVELKRIENKINRQVTFAKRRNGLFKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNSMLKTLERYQKCSYGAVEVNRPCKELEQSSYREYLKLKSRFESLQRTQRNLLGEELGPLNSEELEQLEHQLEASLTQVRSTKTQYMLDQLSDLQTKEQMLIEANRALTIKLDEISSRNHLRQAWEAGEQNISYGPQNAQTQGFFQPLDCNPTLQIGYSGADEMAATGSAHGQQVTGFIPGWML 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47235609 47239518 - Bda003402.1 Bda01g01197 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01197 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bda01g01197 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda01g01197 245 Coils Coil 126 146 - -
Bda01g01197 245 Pfam K-box region 89 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda01g01197 245 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Bda01g01197 245 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Bda01g01197 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bda01g01197 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bda01g01197 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Bda01g01197 245 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bda01g01197 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda01g01197 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda01g01197 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda01g01197 245 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bda01g01197 245 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01197 Bda-Chr1:47235609 Bda13g00532 Bda-Chr13:6364512 4.39E-103 dispersed
Bda07g01036 Bda-Chr7:12216706 Bda01g01197 Bda-Chr1:47235609 7.72E-37 dispersed
Bda09g00067 Bda-Chr9:1308912 Bda01g01197 Bda-Chr1:47235609 4.43E-45 dispersed
Bda01g01197 Bda-Chr1:47235609 Bda13g01744 Bda-Chr13:40767458 2.50E-168 wgd
Bda01g01197 Bda-Chr1:47235609 Bda13g01726 Bda-Chr13:40558652 7.34E-93 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15428 PF01486 K-box 1.70E-26 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01197 K09264 - jre:108989428 406.371