Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01211 ATGTGCGTGAACGATCCACAGTGGTGCATACCCAACGCCGGGACGATCACAATAACAGCCACCAATTTCTGCCCACCGAATTACACCAAAACCCACGATATTTGGTGCAATCCACCGCAAAAACACTTCGATCTCTCGCTGCCTATGTTCCTCAAGATTGCGCAATACCGAGCTGGAGTCGTTCCGGTCCGCTTCCGGCGAGTTCCTTGTCACAAATCGGGAGGGGTAAAGTTTGAGATAAAAGGACATCCTAACTGGAATCTCGTTTTGGTGTATAACGTGGGTGGATCGGGCGATGTTACGAGTGTTAAGATCAAGGGAGAGAAGACTGGTTGGATTCAAATGACGAGGAACTGGGGGATGAATTGGCAGTCCGGTGAGTATTTGATCGGGCAAAGCTTGTCGTTTCAAGTGACAATCAGTGATGGGAGGACGATCGAGGTTTATAATGTGGCGCCATCGAGTTGGCAGTTTGGGCAGAGCTTCGAGGGAAGTACAAATTTCTAG 507 49.31 MCVNDPQWCIPNAGTITITATNFCPPNYTKTHDIWCNPPQKHFDLSLPMFLKIAQYRAGVVPVRFRRVPCHKSGGVKFEIKGHPNWNLVLVYNVGGSGDVTSVKIKGEKTGWIQMTRNWGMNWQSGEYLIGQSLSFQVTISDGRTIEVYNVAPSSWQFGQSFEGSTNF 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47394024 47394530 - Bda003422.1 Bda01g01211 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01211 168 SMART dpbb_1 1 65 IPR007112 -
Bda01g01211 168 SUPERFAMILY PHL pollen allergen 72 164 IPR036749 -
Bda01g01211 168 PRINTS Expansin signature 33 50 IPR002963 GO:0009664
Bda01g01211 168 PRINTS Expansin signature 16 26 IPR002963 GO:0009664
Bda01g01211 168 PRINTS Expansin signature 150 166 IPR002963 GO:0009664
Bda01g01211 168 PRINTS Expansin signature 2 13 IPR002963 GO:0009664
Bda01g01211 168 PRINTS Expansin signature 121 142 IPR002963 GO:0009664
Bda01g01211 168 PRINTS Expansin signature 50 63 IPR002963 GO:0009664
Bda01g01211 168 PRINTS Expansin signature 74 86 IPR002963 GO:0009664
Bda01g01211 168 PRINTS Expansin signature 86 107 IPR002963 GO:0009664
Bda01g01211 168 Gene3D - 74 168 IPR036749 -
Bda01g01211 168 Gene3D - 1 71 IPR036908 -
Bda01g01211 168 PANTHER EXPANSIN-A15 1 168 IPR002963 GO:0009664
Bda01g01211 168 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 75 IPR007112 -
Bda01g01211 168 Pfam Lytic transglycolase 8 65 IPR009009 -
Bda01g01211 168 Pfam Expansin C-terminal domain 76 153 IPR007117 -
Bda01g01211 168 PRINTS Expansin/Lol pI family signature 58 74 IPR007118 GO:0005576
Bda01g01211 168 PRINTS Expansin/Lol pI family signature 112 126 IPR007118 GO:0005576
Bda01g01211 168 PRINTS Expansin/Lol pI family signature 150 164 IPR007118 GO:0005576
Bda01g01211 168 PANTHER EXPANSIN 1 168 - -
Bda01g01211 168 SUPERFAMILY Barwin-like endoglucanases 2 93 IPR036908 -
Bda01g01211 168 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 85 164 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01211 Bda-Chr1:47394024 Bda05g00964 Bda-Chr5:58134678 1.40E-76 dispersed
Bda01g01211 Bda-Chr1:47394024 Bda14g00205 Bda-Chr14:1429819 2.37E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01211 - - cit:102617104 280.796