Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01224 GAGAAAGAGTTTAGCTTTCTTTTAGAGAGCTTGGGGAAGATAGCAATGGAGTTTCTGTTCAGAAAGTTGCCGCCGACAATGGTGGCGATTGCGGTGGCTTTGTGTGTTTTAGGGATAATGGTGCCAGAAGTTTCAGGCACTCGGTGGATTGTAGGGAGTAACATGGGCTGGACCAACGGTGTTAACTACACTATTTGGGCTCAAGATAAGCACTTCTACAATGGCGACTGGCTCTTCTTTGTTTACGACCGGAATCAAAATAACGTTCTCGAGGTGAACAAAACGGACTACGAGTTATGCAATTCCGATAACCCGATCCACAGCTGGACAACCGGCGCCGGAAGAGACGTCGTCCCGCTCAACGTGACGAGGCCCTACTATTTCATCAGCGGCAAAGGTTTCTGCTTTGGAGGCATGAAGCTGGCTATTAATGTTGAGAATTTACCTCCTCCTCCCTCATCTTTGCCACTAGGTGAGAAGAGCTCTGCTCCAACACTAACTTACGGATTGACCCGTCTTGTTCTTCCGGTGGCTTTAGCCGTCGGAGTCGTCTGGGAAGCTCTTTCCCGGCTCTGA 576 49.48 EKEFSFLLESLGKIAMEFLFRKLPPTMVAIAVALCVLGIMVPEVSGTRWIVGSNMGWTNGVNYTIWAQDKHFYNGDWLFFVYDRNQNNVLEVNKTDYELCNSDNPIHSWTTGAGRDVVPLNVTRPYYFISGKGFCFGGMKLAINVENLPPPPSSLPLGEKSSAPTLTYGLTRLVLPVALAVGVVWEALSRL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47609870 47611029 + Bda003438.1 Bda01g01224 1224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01224 191 Pfam Plastocyanin-like domain 57 138 IPR003245 GO:0009055
Bda01g01224 191 SUPERFAMILY Cupredoxins 46 145 IPR008972 -
Bda01g01224 191 PANTHER LAMIN-LIKE PROTEIN 27 182 - -
Bda01g01224 191 ProSiteProfiles Phytocyanin domain profile. 47 147 IPR003245 GO:0009055
Bda01g01224 191 PANTHER BLUE COPPER PROTEIN 27 182 IPR039391 GO:0009055
Bda01g01224 191 Gene3D - 46 148 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01224 - - - cit:102623851 244.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01224 Bda-Chr1:47609870 Bda09g00514 Bda-Chr9:6802308 7.04E-18 dispersed
Bda12g00563 Bda-Chr12:9658879 Bda01g01224 Bda-Chr1:47609870 1.28E-28 transposed
Bda01g01224 Bda-Chr1:47609870 Bda13g01701 Bda-Chr13:40376899 1.02E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1593 . . Bda01g01224 . Bpe02g01443 Bpe14g00162 . . . Cmo11g01201 . . Car11g00976 Car14g00951 . . . . . . . . . . Cla10g01479 Cam10g1524 Cec10g1562 Cco10g1540 Clacu10g1537 Cmu10g2301 Cre10g1684 . . . Cone16ag0481 . . . . Blo17g00375 Blo18g00400 . . . . . . . . . . . . . Cpe04g00182 . . . . . . . . . . . . . . . . Csa03g03793 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00514 . 8 146 Phytocyanin Superfamily AT5G53870 55.4 4.9e-40 162.2
Bda09g00514 . 5 140 Phytocyanin Superfamily AT4G27520 53.6 1.7e-37 153.7
Bda09g00860 . 21 131 Phytocyanin Superfamily AT3G18590 64.9 1.5e-40 162.9
Bda14g00907 . 512 621 Phytocyanin Superfamily AT3G18590 66.4 1.9e-40 162.5
Bda12g00590 CCT 21 131 Phytocyanin Superfamily AT3G18590 63.1 3.7e-39 158.3
Bda09g00860 . 1 142 Phytocyanin Superfamily AT1G48940 60.0 5.5e-45 177.6
Bda14g00907 . 492 618 Phytocyanin Superfamily AT1G48940 63.3 1.0e-43 173.3
Bda12g00590 CCT 1 142 Phytocyanin Superfamily AT1G48940 58.6 1.4e-43 172.9
Bda01g01015 . 24 177 Phytocyanin Superfamily AT5G25090 53.4 4.7e-39 157.9
Bda01g01015 . 12 172 Phytocyanin Superfamily AT2G25060 52.5 4.5e-42 167.9
Bda01g01015 . 10 176 Phytocyanin Superfamily AT4G31840 51.5 8.8e-43 170.2
Bda01g01224 . 41 191 Phytocyanin Superfamily AT5G15350 54.6 1.3e-46 183.0
Bda13g01701 . 32 181 Phytocyanin Superfamily AT5G15350 53.0 1.3e-43 172.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01224 Bda_Chr01 FPKM 11.624295 14.057637 20.310913 21.767944 12.488502 11.790312 13.493845 35.124241 32.534283