Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01225 ATGAGCCAGGTATTTGAAGGATATGAACGGCAATATTGCGAGCTTTCTGCGAATCTTTCCAGAAAGTGTACCACGGCCAGTGCCCTCGATGGGGAACAGAAGAAGCAAAAACTTGCTGATTTGAAATCTGGAATTGATGAGGCAGAATCTTTGATTCGCAAAATGGATCTTGAGGCGAGAAGTTTGCAGCCAAATATCAAGGCTATTCTTCTGGCTAAGTTAAGGGAATACAAATCAGATTTGAACAATCTGAAAAGTGAAGTTAAGCGAATTGGATCTGGCAACTCATATGCATCTGCTCGGGATGAGTTATTGGAATCAGGAATGGCTGATACATTGACAGCATCAGCGGATCAAAGGGCACGATTGATGACCGCAACCGAGAGATTAAACTTGTCTGGGGACAGAATTAAAGAAAGTCAAAGAACCATGCTGGAAACAGAAGATCTTGGCGTTTCAATTCTTCAAGACTTGCATTCACAAAGGCAGTCTCTCTTGCATGCTCATAACACGCTTCATACAGTGGATGACAACATTGGGAAGAGTAAGAAAATCTTGACCAACATATCAAGGAGAATGAACAGAAACAAGTGGATTATTGCAGCCATTGTCGTAGTCCTTGTTATAGTCATTGCTCTGGTACTGTACTTCAAACTGAGGTAA 663 41.78 MSQVFEGYERQYCELSANLSRKCTTASALDGEQKKQKLADLKSGIDEAESLIRKMDLEARSLQPNIKAILLAKLREYKSDLNNLKSEVKRIGSGNSYASARDELLESGMADTLTASADQRARLMTATERLNLSGDRIKESQRTMLETEDLGVSILQDLHSQRQSLLHAHNTLHTVDDNIGKSKKILTNISRRMNRNKWIIAAIVVVLVIVIALVLYFKLR 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 47634475 47638355 + Bda003439.1 Bda01g01225 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01225 220 Coils Coil 67 87 - -
Bda01g01225 220 Gene3D - 117 197 - -
Bda01g01225 220 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
Bda01g01225 220 Gene3D - 1 99 IPR038407 -
Bda01g01225 220 SUPERFAMILY SNARE fusion complex 131 189 - -
Bda01g01225 220 SUPERFAMILY t-snare proteins 6 91 IPR010989 GO:0016020|GO:0016192
Bda01g01225 220 PIRSF Membrin-2 1 219 IPR027027 GO:0005484|GO:0005794|GO:0016192
Bda01g01225 220 CDD SNARE_Vti1 127 188 - -
Bda01g01225 220 Coils Coil 38 58 - -
Bda01g01225 220 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 219 - -
Bda01g01225 220 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 1 219 - -
Bda01g01225 220 Pfam Snare region anchored in the vesicle membrane C-terminus 128 193 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01225 Bda13g01699 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda14g00284 Bda-Chr14:1934114 Bda01g01225 Bda-Chr1:47634475 9.50E-89 transposed
Bda01g01225 Bda-Chr1:47634475 Bda13g01699 Bda-Chr13:40350190 1.41E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01225 K08493 - rcu:8283429 352.443