Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01276 ATGGCTGCTCTGCAACTTCTCCGTTACGGAGCTGTTGATCGCTCCTCCTTATTCTGCTCCAATGATTTATCGTCCTCGTTCTGGGGACGAGATTTGTGTCTCGGCTCTAGGTGCAGTTCCAGAGTGAATATTCAGTTTAATGGGAGTTTCCCCAGGGTTTTCGCCATGTCAAGTGGAGCACCGTCTCCTTTCAAGATGAACCTCAATGAGTACATGGTTACTCTTGAAAAACCTCTAGGTATTCGCTTCGCTCTTTCCATCGACGGAAAAATATTCGTTCACGCTCTTAAAAGAGGGGGTAATGCTGAGAAGTCAAGGATAATCATGGTGGGAGACACATTGAAGAAGGCTAGCGAATCGTCTGGTGGCAGGATCATACAGATCAATGACTTAAGTGATACCCAGAAGATGCTGAAGGAGAAATCAGGATCTTTTAGTCTGGTTTTTGAAAGACCCTTCTCTACTTTTCCAATTCAACAGCTTCTATTTAGTGATTTTGACATATTATTCAATAGAGGTCGAGTCCCTATTGCCTCATGGAACAAGAATGTTACAGCACTGGCATCTACCGACAGTGATGGCAATTCTGGGTTTGCTGTGTTTTCCTCAAAGTTTTCAACATCACAAGGGTGGAATATTTTGAACCAAAATGAGGCTATAAAACCACAAAAGCAGAAGAATTCTCTCTTACCTCCCATAAAACAGCTGATCAGTATCTTTTCAGAAGAGGAATCTGGAGATGGAGAGTGGGGTCATGGGAGGTTCCCATTAGAGGAGTATACTAAAGCACTGGATCGGTCGAAAGGCGAGCTATACTATGATCACTTTCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATATATGTGGGGTCATGCATACAAACTGAAGCTGATGTGGAGACTTTGGCAAAGATGGGGGTTACTGCTGTTTTGAATTTCCAAAGTGGAATTGATGCAGAAAATTGGGGTATCAATTCTCAGTTGATTAATGAGTCGTGCCAAAGATTGGATATCCTAATGGTCAATTATCCAATAAGGGAAGGTGATTCTTATGACTTAAGGAAGAAGCTACCGTTTTGTGTGGGGTTACTATTACGCTTGTTAAAGAAGAGCCACCGTGTTTTTATTACGTGTACTACTGGTTTTGATCGATCTCCGTCTTGTGTGATTGCATACCTGCATTGGATTACTGATACTTCCCTTCAGGCAGCATATAATTTTGTTACCAGTTTGCATATATGCAAGCCAGACAGGCCAGCTATTGCTTGGGCTACATGGGATCTCATAGCTCTGGTGGAAAATGGTGGGCACGACGGACCCGCGACACATGCCGTGACCTTTGTGTGGAATGGACAAGAGGGAGAGGAAGTGCTTTTGGTTGGAGATTTTACTGGAAATTGGAAGGAACCAGTGAGGGCAACCCACAAGGGAGGGCCAAGATATGAGGTGGAATTGAGACTTTCACAAGGAAAGTACAACTATAAGTATATAGTAAACGGTCAATGGCGGCATTCAACATCATCACCGGCAGAGAGGGACGAGCGGGGGAACGTCAATAACGTGATTGAAATAGGCGATGCTGCCAGTGTTCGACCTGCCGATCAACAGCACAAGAAAGATGCCAATATCTTAAAGGTGATCGAGAGGCCATTGACAGAAAACGAACGCTTTATGCTGGCCAAGGCTGCTCGATGCATCGCATTCTCCGTCTGCCCAATCAGGCTAGCTCCCAAGTAG 1740 44.37 MAALQLLRYGAVDRSSLFCSNDLSSSFWGRDLCLGSRCSSRVNIQFNGSFPRVFAMSSGAPSPFKMNLNEYMVTLEKPLGIRFALSIDGKIFVHALKRGGNAEKSRIIMVGDTLKKASESSGGRIIQINDLSDTQKMLKEKSGSFSLVFERPFSTFPIQQLLFSDFDILFNRGRVPIASWNKNVTALASTDSDGNSGFAVFSSKFSTSQGWNILNQNEAIKPQKQKNSLLPPIKQLISIFSEEESGDGEWGHGRFPLEEYTKALDRSKGELYYDHFLGMRYSKITEQIYVGSCIQTEADVETLAKMGVTAVLNFQSGIDAENWGINSQLINESCQRLDILMVNYPIREGDSYDLRKKLPFCVGLLLRLLKKSHRVFITCTTGFDRSPSCVIAYLHWITDTSLQAAYNFVTSLHICKPDRPAIAWATWDLIALVENGGHDGPATHAVTFVWNGQEGEEVLLVGDFTGNWKEPVRATHKGGPRYEVELRLSQGKYNYKYIVNGQWRHSTSSPAERDERGNVNNVIEIGDAASVRPADQQHKKDANILKVIERPLTENERFMLAKAARCIAFSVCPIRLAPK 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48158877 48162692 - Bda003504.1 Bda01g01276 1276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01276 579 SMART dsp_5 280 435 IPR020422 GO:0006470|GO:0008138
Bda01g01276 579 CDD E_set_AMPKbeta_like_N 446 525 - -
Bda01g01276 579 Pfam Dual specificity phosphatase, catalytic domain 288 416 IPR000340 GO:0008138|GO:0016311
Bda01g01276 579 Gene3D Protein tyrosine phosphatase superfamily 273 560 IPR029021 -
Bda01g01276 579 ProSiteProfiles PDZ domain profile. 72 153 IPR001478 GO:0005515
Bda01g01276 579 CDD PDZ_signaling 70 148 - -
Bda01g01276 579 SUPERFAMILY E set domains 444 526 IPR014756 -
Bda01g01276 579 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 579 IPR030066 GO:0005983
Bda01g01276 579 Gene3D Immunoglobulins 433 530 IPR013783 -
Bda01g01276 579 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 579 - -
Bda01g01276 579 CDD DSP_laforin-like 279 424 IPR045204 GO:0019203|GO:0046838
Bda01g01276 579 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 275 414 IPR029021 -
Bda01g01276 579 SUPERFAMILY PDZ domain-like 50 158 IPR036034 GO:0005515
Bda01g01276 579 Pfam Glycogen recognition site of AMP-activated protein kinase 446 527 IPR032640 -
Bda01g01276 579 ProSiteProfiles Dual specificity protein phosphatase domain profile. 280 438 IPR020422 GO:0006470|GO:0008138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01276 - - - jre:108992878 883.634
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01276 Bda-Chr1:48158877 Bda14g00375 Bda-Chr14:2722992 2.35E-30 dispersed
Bda01g01276 Bda-Chr1:48158877 Bda03g01197 Bda-Chr3:14510541 1.82E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1353 . . Bda01g01276 . . . . . . Cmo11g01690 Cma11g01431 . Car11g01375 . . . . . . . . . . . Cla10g01351 Cam10g1259 Cec10g1431 Cco10g1406 Clacu10g1409 Cmu10g2179 Cre10g1562 Cone11ag0116 Cone18ag1361 . . . . Chy04g01457 Cme04g01886 . Blo18g00335 . . . . Bma01g00978 . . . . . . . . . . Bhi11g01648 . . . Hepe02g1823 . . . . . . . . . . Csa03g03940 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g01451 BCT 42 615 Protein tyrosine phosphatase (PTP) family AT3G50110 59.4 2.0e-182 636.0
Bda15g00847 BCT 42 608 Protein tyrosine phosphatase (PTP) family AT3G50110 58.5 7.4e-177 617.5
Bda10g00214 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 59.5 8.2e-176 614.0
Bda10g00247 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 58.8 7.7e-174 607.4
Bda13g01705 . 318 635 Protein tyrosine phosphatase (PTP) family AT5G39400 61.3 4.8e-108 388.3
Bda15g00402 . 1 433 Protein tyrosine phosphatase (PTP) family AT3G10550 54.5 6.9e-146 515.0
Bda15g00402 . 2 435 Protein tyrosine phosphatase (PTP) family AT5G04540 52.3 3.1e-138 489.6
Bda11g01706 BCT 4 155 Protein tyrosine phosphatase (PTP) family AT5G58160 61.4 8.7e-44 176.4
Bda11g00846 . 23 333 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 9.7e-123 436.8
Bda15g00697 . 6 900 Protein tyrosine phosphatase (PTP) family AT5G23720 61.1 1.7e-299 1025.4
Bda03g01256 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.4 2.3e-40 162.2
Bda14g01416 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 2.4e-72 268.5
Bda14g00375 . 17 293 Protein tyrosine phosphatase (PTP) family AT3G52180 70.3 4.0e-114 407.9
Bda14g00209 . 33 289 Protein tyrosine phosphatase (PTP) family AT3G10940 73.6 3.7e-112 401.4
Bda01g01276 . 137 579 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 7.1e-198 686.8
Bda14g01411 . 3 209 Protein tyrosine phosphatase (PTP) family AT2G32960 53.7 9.7e-67 250.4
Bda13g01849 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 51.6 4.8e-50 194.9
Bda15g00865 . 35 142 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 8.6e-39 157.5
Bda07g00455 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 56.7 2.5e-99 359.0
Bda01g02034 . 6 269 Protein tyrosine phosphatase (PTP) family AT2G35680 51.7 6.1e-77 284.6
Bda01g02034 . 27 200 Protein tyrosine phosphatase (PTP) family AT5G56610 53.4 4.5e-45 177.9
Bda14g01411 . 35 209 Protein tyrosine phosphatase (PTP) family AT4G03960 66.3 1.8e-68 255.8
Bda13g01849 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 57.1 3.6e-53 204.9
Bda15g00865 . 24 142 Protein tyrosine phosphatase (PTP) family AT4G03960 60.5 3.3e-38 155.2
Bda13g01849 . 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 3.1e-84 308.1
Bda14g01411 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 59.5 1.9e-57 219.2
Bda15g00865 . 30 142 Protein tyrosine phosphatase (PTP) family AT3G02800 61.9 9.8e-38 153.7
Bda14g00109 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 61.4 2.3e-55 214.2
Bda13g01705 . 318 635 Protein tyrosine phosphatase (PTP) family AT5G39400 61.3 4.8e-108 388.3
Bda14g01451 BCT 32 615 Protein tyrosine phosphatase (PTP) family AT3G19420 66.8 5.1e-223 770.8
Bda15g00847 BCT 32 608 Protein tyrosine phosphatase (PTP) family AT3G19420 65.9 7.8e-216 746.9
Bda10g00214 . 34 592 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 4.5e-187 651.4
Bda10g00247 . 34 592 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 4.9e-186 647.9
Bda14g01451 BCT 42 615 Protein tyrosine phosphatase (PTP) family AT3G50110 59.4 2.0e-182 636.0
Bda15g00847 BCT 42 608 Protein tyrosine phosphatase (PTP) family AT3G50110 58.5 7.4e-177 617.5
Bda10g00214 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 59.5 8.2e-176 614.0
Bda10g00247 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 58.8 7.7e-174 607.4
Bda11g01706 BCT 4 155 Protein tyrosine phosphatase (PTP) family AT5G58160 61.4 8.7e-44 176.4
Bda15g00402 . 1 433 Protein tyrosine phosphatase (PTP) family AT3G10550 54.5 6.9e-146 515.0
Bda15g00402 . 2 435 Protein tyrosine phosphatase (PTP) family AT5G04540 52.3 3.1e-138 489.6
Bda07g00669 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.2 1.5e-75 279.6
Bda06g01290 . 10 276 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 9.4e-101 363.6
Bda05g00942 . 1 661 Protein tyrosine phosphatase (PTP) family AT3G09100 69.9 9.3e-287 982.6
Bda05g00942 . 5 661 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 1.3e-261 899.0
Bda05g00942 . 87 668 Protein tyrosine phosphatase (PTP) family AT5G28210 57.6 3.9e-186 648.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008517 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01276 Bda_Chr01 FPKM 0.684783 0.470396 1.608091 1.67306 3.204316 3.511622 2.733607 2.229251 2.207923