Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01276 ATGGCTGCTCTGCAACTTCTCCGTTACGGAGCTGTTGATCGCTCCTCCTTATTCTGCTCCAATGATTTATCGTCCTCGTTCTGGGGACGAGATTTGTGTCTCGGCTCTAGGTGCAGTTCCAGAGTGAATATTCAGTTTAATGGGAGTTTCCCCAGGGTTTTCGCCATGTCAAGTGGAGCACCGTCTCCTTTCAAGATGAACCTCAATGAGTACATGGTTACTCTTGAAAAACCTCTAGGTATTCGCTTCGCTCTTTCCATCGACGGAAAAATATTCGTTCACGCTCTTAAAAGAGGGGGTAATGCTGAGAAGTCAAGGATAATCATGGTGGGAGACACATTGAAGAAGGCTAGCGAATCGTCTGGTGGCAGGATCATACAGATCAATGACTTAAGTGATACCCAGAAGATGCTGAAGGAGAAATCAGGATCTTTTAGTCTGGTTTTTGAAAGACCCTTCTCTACTTTTCCAATTCAACAGCTTCTATTTAGTGATTTTGACATATTATTCAATAGAGGTCGAGTCCCTATTGCCTCATGGAACAAGAATGTTACAGCACTGGCATCTACCGACAGTGATGGCAATTCTGGGTTTGCTGTGTTTTCCTCAAAGTTTTCAACATCACAAGGGTGGAATATTTTGAACCAAAATGAGGCTATAAAACCACAAAAGCAGAAGAATTCTCTCTTACCTCCCATAAAACAGCTGATCAGTATCTTTTCAGAAGAGGAATCTGGAGATGGAGAGTGGGGTCATGGGAGGTTCCCATTAGAGGAGTATACTAAAGCACTGGATCGGTCGAAAGGCGAGCTATACTATGATCACTTTCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATATATGTGGGGTCATGCATACAAACTGAAGCTGATGTGGAGACTTTGGCAAAGATGGGGGTTACTGCTGTTTTGAATTTCCAAAGTGGAATTGATGCAGAAAATTGGGGTATCAATTCTCAGTTGATTAATGAGTCGTGCCAAAGATTGGATATCCTAATGGTCAATTATCCAATAAGGGAAGGTGATTCTTATGACTTAAGGAAGAAGCTACCGTTTTGTGTGGGGTTACTATTACGCTTGTTAAAGAAGAGCCACCGTGTTTTTATTACGTGTACTACTGGTTTTGATCGATCTCCGTCTTGTGTGATTGCATACCTGCATTGGATTACTGATACTTCCCTTCAGGCAGCATATAATTTTGTTACCAGTTTGCATATATGCAAGCCAGACAGGCCAGCTATTGCTTGGGCTACATGGGATCTCATAGCTCTGGTGGAAAATGGTGGGCACGACGGACCCGCGACACATGCCGTGACCTTTGTGTGGAATGGACAAGAGGGAGAGGAAGTGCTTTTGGTTGGAGATTTTACTGGAAATTGGAAGGAACCAGTGAGGGCAACCCACAAGGGAGGGCCAAGATATGAGGTGGAATTGAGACTTTCACAAGGAAAGTACAACTATAAGTATATAGTAAACGGTCAATGGCGGCATTCAACATCATCACCGGCAGAGAGGGACGAGCGGGGGAACGTCAATAACGTGATTGAAATAGGCGATGCTGCCAGTGTTCGACCTGCCGATCAACAGCACAAGAAAGATGCCAATATCTTAAAGGTGATCGAGAGGCCATTGACAGAAAACGAACGCTTTATGCTGGCCAAGGCTGCTCGATGCATCGCATTCTCCGTCTGCCCAATCAGGCTAGCTCCCAAGTAG 1740 44.37 MAALQLLRYGAVDRSSLFCSNDLSSSFWGRDLCLGSRCSSRVNIQFNGSFPRVFAMSSGAPSPFKMNLNEYMVTLEKPLGIRFALSIDGKIFVHALKRGGNAEKSRIIMVGDTLKKASESSGGRIIQINDLSDTQKMLKEKSGSFSLVFERPFSTFPIQQLLFSDFDILFNRGRVPIASWNKNVTALASTDSDGNSGFAVFSSKFSTSQGWNILNQNEAIKPQKQKNSLLPPIKQLISIFSEEESGDGEWGHGRFPLEEYTKALDRSKGELYYDHFLGMRYSKITEQIYVGSCIQTEADVETLAKMGVTAVLNFQSGIDAENWGINSQLINESCQRLDILMVNYPIREGDSYDLRKKLPFCVGLLLRLLKKSHRVFITCTTGFDRSPSCVIAYLHWITDTSLQAAYNFVTSLHICKPDRPAIAWATWDLIALVENGGHDGPATHAVTFVWNGQEGEEVLLVGDFTGNWKEPVRATHKGGPRYEVELRLSQGKYNYKYIVNGQWRHSTSSPAERDERGNVNNVIEIGDAASVRPADQQHKKDANILKVIERPLTENERFMLAKAARCIAFSVCPIRLAPK 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48158877 48162692 - Bda003504.1 Bda01g01276 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01276 579 SMART dsp_5 280 435 IPR020422 GO:0006470|GO:0008138
Bda01g01276 579 CDD E_set_AMPKbeta_like_N 446 525 - -
Bda01g01276 579 Pfam Dual specificity phosphatase, catalytic domain 288 416 IPR000340 GO:0008138|GO:0016311
Bda01g01276 579 Gene3D Protein tyrosine phosphatase superfamily 273 560 IPR029021 -
Bda01g01276 579 ProSiteProfiles PDZ domain profile. 72 153 IPR001478 GO:0005515
Bda01g01276 579 CDD PDZ_signaling 70 148 - -
Bda01g01276 579 SUPERFAMILY E set domains 444 526 IPR014756 -
Bda01g01276 579 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 579 IPR030066 GO:0005983
Bda01g01276 579 Gene3D Immunoglobulins 433 530 IPR013783 -
Bda01g01276 579 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 24 579 - -
Bda01g01276 579 CDD DSP_laforin-like 279 424 IPR045204 GO:0019203|GO:0046838
Bda01g01276 579 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 275 414 IPR029021 -
Bda01g01276 579 SUPERFAMILY PDZ domain-like 50 158 IPR036034 GO:0005515
Bda01g01276 579 Pfam Glycogen recognition site of AMP-activated protein kinase 446 527 IPR032640 -
Bda01g01276 579 ProSiteProfiles Dual specificity protein phosphatase domain profile. 280 438 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01276 Bda-Chr1:48158877 Bda14g00375 Bda-Chr14:2722992 2.35E-30 dispersed
Bda01g01276 Bda-Chr1:48158877 Bda03g01197 Bda-Chr3:14510541 1.82E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01276 - - jre:108992878 883.634