Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g01276 | ATGGCTGCTCTGCAACTTCTCCGTTACGGAGCTGTTGATCGCTCCTCCTTATTCTGCTCCAATGATTTATCGTCCTCGTTCTGGGGACGAGATTTGTGTCTCGGCTCTAGGTGCAGTTCCAGAGTGAATATTCAGTTTAATGGGAGTTTCCCCAGGGTTTTCGCCATGTCAAGTGGAGCACCGTCTCCTTTCAAGATGAACCTCAATGAGTACATGGTTACTCTTGAAAAACCTCTAGGTATTCGCTTCGCTCTTTCCATCGACGGAAAAATATTCGTTCACGCTCTTAAAAGAGGGGGTAATGCTGAGAAGTCAAGGATAATCATGGTGGGAGACACATTGAAGAAGGCTAGCGAATCGTCTGGTGGCAGGATCATACAGATCAATGACTTAAGTGATACCCAGAAGATGCTGAAGGAGAAATCAGGATCTTTTAGTCTGGTTTTTGAAAGACCCTTCTCTACTTTTCCAATTCAACAGCTTCTATTTAGTGATTTTGACATATTATTCAATAGAGGTCGAGTCCCTATTGCCTCATGGAACAAGAATGTTACAGCACTGGCATCTACCGACAGTGATGGCAATTCTGGGTTTGCTGTGTTTTCCTCAAAGTTTTCAACATCACAAGGGTGGAATATTTTGAACCAAAATGAGGCTATAAAACCACAAAAGCAGAAGAATTCTCTCTTACCTCCCATAAAACAGCTGATCAGTATCTTTTCAGAAGAGGAATCTGGAGATGGAGAGTGGGGTCATGGGAGGTTCCCATTAGAGGAGTATACTAAAGCACTGGATCGGTCGAAAGGCGAGCTATACTATGATCACTTTCTTGGTATGCGCTATAGTAAGATTACAGAGCAAATATATGTGGGGTCATGCATACAAACTGAAGCTGATGTGGAGACTTTGGCAAAGATGGGGGTTACTGCTGTTTTGAATTTCCAAAGTGGAATTGATGCAGAAAATTGGGGTATCAATTCTCAGTTGATTAATGAGTCGTGCCAAAGATTGGATATCCTAATGGTCAATTATCCAATAAGGGAAGGTGATTCTTATGACTTAAGGAAGAAGCTACCGTTTTGTGTGGGGTTACTATTACGCTTGTTAAAGAAGAGCCACCGTGTTTTTATTACGTGTACTACTGGTTTTGATCGATCTCCGTCTTGTGTGATTGCATACCTGCATTGGATTACTGATACTTCCCTTCAGGCAGCATATAATTTTGTTACCAGTTTGCATATATGCAAGCCAGACAGGCCAGCTATTGCTTGGGCTACATGGGATCTCATAGCTCTGGTGGAAAATGGTGGGCACGACGGACCCGCGACACATGCCGTGACCTTTGTGTGGAATGGACAAGAGGGAGAGGAAGTGCTTTTGGTTGGAGATTTTACTGGAAATTGGAAGGAACCAGTGAGGGCAACCCACAAGGGAGGGCCAAGATATGAGGTGGAATTGAGACTTTCACAAGGAAAGTACAACTATAAGTATATAGTAAACGGTCAATGGCGGCATTCAACATCATCACCGGCAGAGAGGGACGAGCGGGGGAACGTCAATAACGTGATTGAAATAGGCGATGCTGCCAGTGTTCGACCTGCCGATCAACAGCACAAGAAAGATGCCAATATCTTAAAGGTGATCGAGAGGCCATTGACAGAAAACGAACGCTTTATGCTGGCCAAGGCTGCTCGATGCATCGCATTCTCCGTCTGCCCAATCAGGCTAGCTCCCAAGTAG | 1740 | 44.37 | MAALQLLRYGAVDRSSLFCSNDLSSSFWGRDLCLGSRCSSRVNIQFNGSFPRVFAMSSGAPSPFKMNLNEYMVTLEKPLGIRFALSIDGKIFVHALKRGGNAEKSRIIMVGDTLKKASESSGGRIIQINDLSDTQKMLKEKSGSFSLVFERPFSTFPIQQLLFSDFDILFNRGRVPIASWNKNVTALASTDSDGNSGFAVFSSKFSTSQGWNILNQNEAIKPQKQKNSLLPPIKQLISIFSEEESGDGEWGHGRFPLEEYTKALDRSKGELYYDHFLGMRYSKITEQIYVGSCIQTEADVETLAKMGVTAVLNFQSGIDAENWGINSQLINESCQRLDILMVNYPIREGDSYDLRKKLPFCVGLLLRLLKKSHRVFITCTTGFDRSPSCVIAYLHWITDTSLQAAYNFVTSLHICKPDRPAIAWATWDLIALVENGGHDGPATHAVTFVWNGQEGEEVLLVGDFTGNWKEPVRATHKGGPRYEVELRLSQGKYNYKYIVNGQWRHSTSSPAERDERGNVNNVIEIGDAASVRPADQQHKKDANILKVIERPLTENERFMLAKAARCIAFSVCPIRLAPK | 579 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 48158877 | 48162692 | - | Bda003504.1 | Bda01g01276 | 1276 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g01276 | 579 | SMART | dsp_5 | 280 | 435 | IPR020422 | GO:0006470|GO:0008138 | |
Bda01g01276 | 579 | CDD | E_set_AMPKbeta_like_N | 446 | 525 | - | - | |
Bda01g01276 | 579 | Pfam | Dual specificity phosphatase, catalytic domain | 288 | 416 | IPR000340 | GO:0008138|GO:0016311 | |
Bda01g01276 | 579 | Gene3D | Protein tyrosine phosphatase superfamily | 273 | 560 | IPR029021 | - | |
Bda01g01276 | 579 | ProSiteProfiles | PDZ domain profile. | 72 | 153 | IPR001478 | GO:0005515 | |
Bda01g01276 | 579 | CDD | PDZ_signaling | 70 | 148 | - | - | |
Bda01g01276 | 579 | SUPERFAMILY | E set domains | 444 | 526 | IPR014756 | - | |
Bda01g01276 | 579 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 24 | 579 | IPR030066 | GO:0005983 | |
Bda01g01276 | 579 | Gene3D | Immunoglobulins | 433 | 530 | IPR013783 | - | |
Bda01g01276 | 579 | PANTHER | PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC | 24 | 579 | - | - | |
Bda01g01276 | 579 | CDD | DSP_laforin-like | 279 | 424 | IPR045204 | GO:0019203|GO:0046838 | |
Bda01g01276 | 579 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 275 | 414 | IPR029021 | - | |
Bda01g01276 | 579 | SUPERFAMILY | PDZ domain-like | 50 | 158 | IPR036034 | GO:0005515 | |
Bda01g01276 | 579 | Pfam | Glycogen recognition site of AMP-activated protein kinase | 446 | 527 | IPR032640 | - | |
Bda01g01276 | 579 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 280 | 438 | IPR020422 | GO:0006470|GO:0008138 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01276 | Bda-Chr1:48158877 | Bda14g00375 | Bda-Chr14:2722992 | 2.35E-30 | dispersed | |
Bda01g01276 | Bda-Chr1:48158877 | Bda03g01197 | Bda-Chr3:14510541 | 1.82E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g01276 | - | - | jre:108992878 | 883.634 |