Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01279 ATGGAGGGTCCGTCAGAGAAAAGATTTCCAGTGAATGCAAAAGATTATAAATTGTACGAAGAAGTTGGTGAAGGTGTCAGCGCCACTGTCTACAGGGCTATCTGCATGCCACTAAATGAGATTGTTGCTATTAAGGTTCTAGATTTGGAGAAGTGCAATAATGACCTGGATGGAATCCGGAGAGAGGTACAAACAATGACTTTGATTTCTCATACAAATGTATTACAAGCACATTGTTCTTTCACAAGTGGCCACAGCCTTTGGGTTGTGATGCCATACATGGCTGGAGGATCATGTCTTCATATAATGAAATCTGCCTATCCAGAAGGTTTCGAAGAGCCTGTTATAGCTACTGTGTTGCGTGAAGTTCTCAAAGCTCTTGTTTACCTTCACGCCCGTGGCCACATCCATAGGGATGTGAAGGCTGGGAATATATTAGTTGATTTTAATGGATCAGTCAAGCTGGCTGACTTTGGAGTGTCAGCTTGTATGTTTGATACTGGAGACAGACTAAGATCAAGAAATACTTTTGTTGGGACCCCTTGTTGGATGGCTCCCGAAGTTATGCAGCAGTTGCATGGATATGATTTTAAGGCAGACATCTGGTCACTGGGAATAACGGCTCTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCGCCAATGAAAGTTTTGCTAATGACTTTGCAAAATGCTCCTCCTGGTCTTGACTACGAAAGAGACAAGAGATTTTCCAAGTCTTTCAAGGAGATGGTGGCTTTATGCTTAGTAAAGGATCCGAAGAAACGTCCAACTTCGGAGAAGCTTCTAAAACATCCTTTTTTCAAACAGGGACGCCAAAATGAATATATAGCTCGCACCATTCTTGACGGCCTTGTCCCTTTAGGGGATCGGTTTAAGATGCTGAAGGCAAAAGAGTCCGATCTTCTTGTGCAGAACAAAGCGATGTATGAAGATAAAGAGCAATTATCACAGCAAGAGTACATTCGAGGAATTAGTGCATGGAACTTTAACCTGGAAGATTTAAAAAGTCAGGCTGCCCTGATTCAGGATGTTGATATTACAGAGGCAGAAGATTCAGATGTGAGGAAGATGCAGAGGGAGAAGAATGATTCTTCGGGATTGCATGTAAAGAGGTCATTCATTGAGCAAATGAAACATTTAAACCCCACACCTAGTCAGGAGGATGAGTTTACCGAACTTCATGATTTGACATGTTCGCTTGCTTCAATGCCAGCTAAGCCTCTTGAAGCACTCAGGCATGATGATATAAAAGCAAATAGTCCACGAGCTTTGGATCAAGAAAATGGTTCTGAGGATGATTGCTCTGGTCAAAATAGTTCATCGCGTTATGATGAGCATAAAAGGAACTTTACTGGCTCACTCCTTCCTGATAGAGCCATTTCTTCCAAAAAAGTTTCTGTTGATGGTGATAGGGATAATCCTCAATCAAAGTATTTATCAGAGCGGAACTATACTGGTTCATTGTTGTATCGCCAGAAAAGAGACATAAATAGCCATTCATCTGCTGAAGATTTGTCAGAAGGAGCAATAGTGCAACATAAGGGCCGGTTTAAAGTCACTTCAGCAGATCTTAGTCCTAAGGGTCCAACTCCAACATCAGTATTGTTAAATGCAGGTTCTGGGGTTATTCCTACAATCCCGAACTTGACAGCTGCTGCAGTTTCTCCATCACTACAGAGCATTTTGCAGCAGCACACGTTGCAAAGGGTTTGTGCAAATTCTAAATATATTTTTACAGTATAA 1773 41.79 MEGPSEKRFPVNAKDYKLYEEVGEGVSATVYRAICMPLNEIVAIKVLDLEKCNNDLDGIRREVQTMTLISHTNVLQAHCSFTSGHSLWVVMPYMAGGSCLHIMKSAYPEGFEEPVIATVLREVLKALVYLHARGHIHRDVKAGNILVDFNGSVKLADFGVSACMFDTGDRLRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSLGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKEMVALCLVKDPKKRPTSEKLLKHPFFKQGRQNEYIARTILDGLVPLGDRFKMLKAKESDLLVQNKAMYEDKEQLSQQEYIRGISAWNFNLEDLKSQAALIQDVDITEAEDSDVRKMQREKNDSSGLHVKRSFIEQMKHLNPTPSQEDEFTELHDLTCSLASMPAKPLEALRHDDIKANSPRALDQENGSEDDCSGQNSSSRYDEHKRNFTGSLLPDRAISSKKVSVDGDRDNPQSKYLSERNYTGSLLYRQKRDINSHSSAEDLSEGAIVQHKGRFKVTSADLSPKGPTPTSVLLNAGSGVIPTIPNLTAAAVSPSLQSILQQHTLQRVCANSKYIFTV 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48193562 48198700 + Bda003507.1 Bda01g01279 1279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01279 590 MobiDBLite consensus disorder prediction 471 490 - -
Bda01g01279 590 Gene3D Transferase(Phosphotransferase) domain 1 97 329 - -
Bda01g01279 590 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01279 590 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 579 - -
Bda01g01279 590 MobiDBLite consensus disorder prediction 448 462 - -
Bda01g01279 590 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01279 590 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Bda01g01279 590 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Bda01g01279 590 MobiDBLite consensus disorder prediction 431 465 - -
Bda01g01279 590 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01279 590 CDD STKc_OSR1_SPAK 14 277 - -
Bda01g01279 590 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 579 - -
Bda01g01279 590 SUPERFAMILY Protein kinase-like (PK-like) 13 324 IPR011009 -
Bda01g01279 590 MobiDBLite consensus disorder prediction 473 487 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01279 K08835 OXSR1, STK39; serine/threonine-protein kinase OSR1/STK39 [EC:2.7.11.1] - csv:101205102 853.973
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01279 Bda13g01619 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01279 Bda-Chr1:48193562 Bda06g01211 Bda-Chr6:41982305 0 dispersed
Bda01g02122 Bda-Chr1:57248819 Bda01g01279 Bda-Chr1:48193562 1.42E-58 transposed
Bda04g00602 Bda-Chr4:54654699 Bda01g01279 Bda-Chr1:48193562 1.25E-12 transposed
Bda04g00785 Bda-Chr4:57781203 Bda01g01279 Bda-Chr1:48193562 0 transposed
Bda07g00318 Bda-Chr7:4226532 Bda01g01279 Bda-Chr1:48193562 2.92E-71 transposed
Bda01g01279 Bda-Chr1:48193562 Bda13g01619 Bda-Chr13:39677955 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1350 . . Bda01g01279 Bda13g01619 Bpe02g01494 Bpe14g00247 . . . . . . . . Sed02g1388 . Cpe13g00900 Bhi06g00518 Tan11g0629 Cmetu09g0153 . . . . . . . . . . . Cone11ag0114 Cone18ag1363 . . Lsi02g01568 Csa05g01916 . . Blo17g00301 Blo18g00333 . . . . Bma01g00975 . . Cmo04g02836 Cmo15g00350 Cma04g02707 Cma15g00341 Car04g02610 Car15g00325 . Cpe01g02349 . . . . . . . Cla09g01858 Cam09g1954 Cec09g2018 Cco09g2111 . . . . . Chy09g00338 Cme09g00387
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda07g00318 . 1 688 MAP Kinase Kinase Kinase Kinase AT1G53165 61.4 2.6e-215 745.3
Bda01g02122 . 223 488 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.3e-67 253.8
Bda07g00318 . 1 688 MAP Kinase Kinase Kinase Kinase AT3G15220 64.7 6.1e-233 803.9
Bda01g02122 . 223 488 MAP Kinase Kinase Kinase Kinase AT3G15220 50.2 6.8e-67 252.3
Bda01g02122 . 9 825 MAP Kinase Kinase Kinase Kinase AT1G69220 57.8 4.9e-242 834.3
Bda07g00318 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.8 7.2e-68 255.8
Bda13g01619 BCT 1 589 MAP Kinase Kinase Kinase Kinase AT5G14720 66.7 6.6e-224 773.9
Bda01g01279 BCT 1 579 MAP Kinase Kinase Kinase Kinase AT5G14720 64.9 1.3e-216 749.6
Bda04g00785 . 3 352 MAP Kinase Kinase Kinase Kinase AT5G14720 69.7 3.1e-149 525.8
Bda06g01211 . 3 354 MAP Kinase Kinase Kinase Kinase AT5G14720 70.0 1.6e-145 513.5
Bda06g01226 . 368 666 MAP Kinase Kinase Kinase Kinase AT5G14720 71.7 3.1e-125 446.0
Bda08g00655 . 6 318 MAP Kinase Kinase Kinase Kinase AT5G14720 62.4 3.1e-125 446.0
Bda08g00655 . 8 634 MAP Kinase Kinase Kinase Kinase AT4G24100 59.9 1.3e-204 709.9
Bda06g01211 . 5 515 MAP Kinase Kinase Kinase Kinase AT4G24100 67.9 2.8e-188 655.6
Bda06g01226 . 368 962 MAP Kinase Kinase Kinase Kinase AT4G24100 61.6 3.7e-188 655.2
Bda01g01279 BCT 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 66.0 1.2e-135 480.7
Bda04g00785 . 2 353 MAP Kinase Kinase Kinase Kinase AT4G24100 64.8 2.3e-134 476.5
Bda13g01619 BCT 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 65.1 6.8e-134 474.9
Bda08g00655 . 9 634 MAP Kinase Kinase Kinase Kinase AT4G10730 60.5 4.0e-208 721.5
Bda06g01211 . 6 515 MAP Kinase Kinase Kinase Kinase AT4G10730 70.8 1.2e-196 683.3
Bda06g01226 . 368 962 MAP Kinase Kinase Kinase Kinase AT4G10730 63.3 6.2e-193 671.0
Bda04g00785 . 4 358 MAP Kinase Kinase Kinase Kinase AT4G10730 66.2 1.5e-138 490.3
Bda13g01619 BCT 7 376 MAP Kinase Kinase Kinase Kinase AT4G10730 63.8 3.7e-137 485.7
Bda01g01279 BCT 1 376 MAP Kinase Kinase Kinase Kinase AT1G70430 67.0 1.3e-146 516.9
Bda13g01619 BCT 5 351 MAP Kinase Kinase Kinase Kinase AT1G70430 70.9 7.1e-145 511.1
Bda04g00785 . 4 348 MAP Kinase Kinase Kinase Kinase AT1G70430 62.6 2.7e-128 456.1
Bda06g01211 . 2 401 MAP Kinase Kinase Kinase Kinase AT1G70430 54.8 7.6e-123 438.0
Bda06g01226 . 368 713 MAP Kinase Kinase Kinase Kinase AT1G70430 56.1 1.2e-107 387.5
Bda08g00655 . 5 307 MAP Kinase Kinase Kinase Kinase AT1G70430 55.1 2.3e-103 373.2
Bda04g00785 . 1 378 MAP Kinase Kinase Kinase Kinase AT1G79640 83.6 1.1e-186 650.2
Bda13g01619 BCT 4 360 MAP Kinase Kinase Kinase Kinase AT1G79640 68.3 4.4e-148 521.9
Bda06g01211 . 5 354 MAP Kinase Kinase Kinase Kinase AT1G79640 66.0 8.4e-139 491.1
Bda06g01226 . 368 666 MAP Kinase Kinase Kinase Kinase AT1G79640 69.2 6.9e-125 444.9
Bda08g00655 . 8 312 MAP Kinase Kinase Kinase Kinase AT1G79640 58.6 6.9e-117 418.3
Bda01g01279 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 57.4 5.6e-100 361.7
Bda13g01619 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 56.2 2.4e-98 356.3
Bda04g00785 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.7 3.5e-86 315.8
Bda06g01211 . 12 303 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 1.6e-78 290.4
Bda06g01226 . 368 615 MAP Kinase Kinase Kinase Kinase AT1G23700 53.4 5.1e-69 258.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003111 2 8 2 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 3 2 2 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69440 PF00069 Pkinase 1.90E-58 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01279 Bda_Chr01 FPKM 1.720801 0.999649 1.683815 2.252264 1.489356 1.031566 1.112815 2.571339 2.212795