Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01310 ATGAGCTGGATTTTCTCCTCCATGTCCGAAGATCTGTTACCTCAATTTGTAGCTTTCACGACGGCGAGTGACCTCTGGACAACGTTAGCTACACGGTTCCCGTCGTCTTCCTTAGCGCGCATCACAGATCTTCGCAACCAACTGATCTGCATCTCCAAAGATGGGTTGTCTGCTACAGCCTACATACACAAAATTACCTCTATCTGCAACACATTGGCTGCGATTAGACATCCTGTGACTTACCAGGATCATCTTCTTTATTTCCTCGGTGGCTTGGGCAGTGACTATAATCCCTTCGTCACTTCTATCACCAACCGACCCGATCATCCGCCGCTTGAGGAGGTGTACAGCCTTCTCCAGAGCTATGACTTCCGGCTAGAAAAACAGAACACGACCATCACTCTTCCCACGCTGGCTCAGTTTCAGGTCAATGCTCTGGTTCACGGTCCCCATCGCCCTCCCTGGCAACCTCTCCTCATGGATTCTCAACTCCGGTGCAACACACCATTTTGTAACTCACTCCGATCATCTCCAGCAACTCCACTCTCTTCCTTAACCTTCCTAAGTCGCTACCCCTCAGATCTTCATTGGCAAGCTGTTAAACGGATCCTGCGCTATCTTAAAGGTACATCCTCACTCGGCATCTCGTTCAAGTGCTCTCCTTCGCACAATCTCACCTGCTATACATATGTTGACTGGGCTGCCTCTTCAAATATTTCATCCCTTATCTCTAAAAAAGATGATCTTGGACCTGGTTTTATGAAGTCTCTTAGAGCTCTTGCACTTGTTGGAGCTGGTGTTTCTGGGTTCTTGAGCTTTGCAACATTAGCTTCTGCAGATGAAGCTGAACATGGCTTGGAATGTCCAAGCTATCCCTGGCCCCACAAGGGTATTCTGAGTTCATATGATCATGCTTCGATCCGTCGTGGCCATCAAGTTTACCAACAAGTCTGTGCTTCATGTCATTCCATGTCTTTAATATCATACCGTGATTTGGTCGGTGTTGCATATACAGAAGAGGAGACAAAAGCAATGGCTGCTGAGATTGAGGTTGTTGATGGGCCTAATGATGAAGGCGAGATGTTCACTCGCCCTGGTAAACTTAGTGACCGATTTCCTCAACCATATGCCAATGAGCAAGCTGCGAGGTTTGCCAATGGAGGGGCATATCCTCCTGATTTAAGTCTCATAACAAAAGCCCGCCACAATGGACAGAACTATGTATTTGCCCTTCTAACTGGTTACCGCGATCCTCCTGCTGGTGTTTCGATAAGAGAAGGTTTGCATTATAATCCTTATTTTCCTGGGGGTGCTATTGCGATGCCAAAAATGCTTAACGATGGTGCTGTTGAGTACGAGGATGGTACTCCTGCAACAGAAGCTCAGATGGGAAAAGACGTAGTGACTTTCTTGTCATGGGCTGCAGAACCTGAAATGGAAGAGAGGAAATTGATGGGATTCAAATGGATATTTGTTCTCTCGCTTGCTCTACTTCAGGCAGCCTATTACCGGCGCTTAAAGTGGTCGGTTCTGAAGTCGCGCAAGTTAGTACTCGACGTGGTGAACTAG 1569 47.29 MSWIFSSMSEDLLPQFVAFTTASDLWTTLATRFPSSSLARITDLRNQLICISKDGLSATAYIHKITSICNTLAAIRHPVTYQDHLLYFLGGLGSDYNPFVTSITNRPDHPPLEEVYSLLQSYDFRLEKQNTTITLPTLAQFQVNALVHGPHRPPWQPLLMDSQLRCNTPFCNSLRSSPATPLSSLTFLSRYPSDLHWQAVKRILRYLKGTSSLGISFKCSPSHNLTCYTYVDWAASSNISSLISKKDDLGPGFMKSLRALALVGAGVSGFLSFATLASADEAEHGLECPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48535661 48550250 - Bda003539.1 Bda01g01310 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01310 522 Gene3D - 282 477 IPR036909 GO:0009055|GO:0020037
Bda01g01310 522 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 477 521 IPR021157 -
Bda01g01310 522 Pfam gag-polypeptide of LTR copia-type 2 125 - -
Bda01g01310 522 PRINTS Cytochrome C1 signature 458 477 IPR002326 GO:0009055|GO:0020037
Bda01g01310 522 PRINTS Cytochrome C1 signature 311 330 IPR002326 GO:0009055|GO:0020037
Bda01g01310 522 PRINTS Cytochrome C1 signature 477 492 IPR002326 GO:0009055|GO:0020037
Bda01g01310 522 PRINTS Cytochrome C1 signature 291 310 IPR002326 GO:0009055|GO:0020037
Bda01g01310 522 PRINTS Cytochrome C1 signature 438 457 IPR002326 GO:0009055|GO:0020037
Bda01g01310 522 PRINTS Cytochrome C1 signature 356 376 IPR002326 GO:0009055|GO:0020037
Bda01g01310 522 PRINTS Cytochrome C1 signature 427 438 IPR002326 GO:0009055|GO:0020037
Bda01g01310 522 PRINTS Cytochrome C1 signature 389 413 IPR002326 GO:0009055|GO:0020037
Bda01g01310 522 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 232 522 - -
Bda01g01310 522 PANTHER CYTOCHROME C1 232 522 IPR002326 GO:0009055|GO:0020037
Bda01g01310 522 ProSiteProfiles Cytochrome c family profile. 305 412 IPR009056 GO:0009055|GO:0020037
Bda01g01310 522 Pfam Cytochrome C1 family 293 509 IPR002326 GO:0009055|GO:0020037
Bda01g01310 522 Gene3D - 478 521 - -
Bda01g01310 522 SUPERFAMILY Cytochrome c 286 476 IPR036909 GO:0009055|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01310 Bda13g01648 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01310 Bda-Chr1:48535661 Bda07g00671 Bda-Chr7:7967938 9.33E-30 dispersed
Bda06g00699 Bda-Chr6:9660583 Bda01g01310 Bda-Chr1:48535661 6.70E-53 transposed
Bda07g01012 Bda-Chr7:11966468 Bda01g01310 Bda-Chr1:48535661 2.65E-78 transposed
Bda09g00166 Bda-Chr9:2504727 Bda01g01310 Bda-Chr1:48535661 2.87E-76 transposed
Bda09g00303 Bda-Chr9:3803330 Bda01g01310 Bda-Chr1:48535661 1.33E-10 transposed
Bda11g01392 Bda-Chr11:17504435 Bda01g01310 Bda-Chr1:48535661 6.68E-11 transposed
Bda01g01310 Bda-Chr1:48535661 Bda13g01648 Bda-Chr13:39949915 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01310 K00413 - nnu:104598216 540.421