Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01331 ATGTGGGAATCGATCTGTTTGACGTTGGCTGCCACCGCCGGTAATAACATCGGCAAAGTGCTTCAGAAGAAGGGCACTGTCATTCTGCCGCCTCTCTCTTTTAAGCTCAAGGTGATAAGGGCTTATGCCTTTAATAAAACTTGGGTGATTGGGTTCCTGATGGACATATTCGGAGCTTTATTGATGTTGAGAGCTCTCTCCTTAGCTCCTGTATCTGTTATTCAACCAGTTTCTGGCTGTGGACTAGCTATTCTCTCTATATTTTCTCATTTTTATTTAAAGGAAATAATGAATGCTGTTGACTGGCTGGGAATTGCCTTAGCAGGCATTGGCACCATAGGAGTTGGTGCTGGAGGCGAGGAGCAGAATTCCTCTGCAATATCTCTTTTGCGGTTGCCATGGCTGGCATTCAGTGTCTCCGTGTTGTTTGTACTTCTTAATGGATGGCTCCATAGCTACAAAAGTCAACGGAGAGAACAAGAGTTGATGCAATTTGAAGTTGTTGAAGAAATTATATATGGCTTAGAATCTGGCGTTTTGTTTGGAATGGCGTCTGTGATATCAAAGATGGGATTTCTATTCTTGGACCAGGGATTCCACTGGATGCTGGTTCCTATATGCATCTTTTTGAGTGCATGCTGTAGCGGTACAGGATTTTATTACCAGACAAGAACTGAATGGTTTCATTCTCTTGGGGTCTTTCAATCCTTGAAGAAGTTGTTCAAGCATGAAGGAGTTCGTGGATTCTACAAAGGAAATGGAGCTAGTGTTATTAGAATTGTTCCATATGCGGCTTTACATTTTATGGCATACGAGGAGTATCGGTGCTGGGTCTTGAACAATTGTCCTGCCTTAGGATCAGGCCCTCTCATTGATCTTTTAGCTGGTTCAGCGGCCGGAGTTGTTGATAATCGAAGAGTTTCCGACAGTGGTTTGAAAAGTTTCCGCACTCAGCCTCCGTATAATGGCATTAAGGACCCTGAGGAGCACCAAAAATCTATTGTGATGCGTCTCGTCGGAAACGTTCAACCTTCCATCCATGGAGATGTTCGACATAGAAACACGGCAAGACGGGCTCTTAGAGCTCTAAAAGGAGTGGTGAGGATTCAAGCTGTAGTCCGAGGCCGACAGGTGAGGAAGCAGGCGGCTGTAACGCTAAGGTGCATGCAGGCTCTAGTCCGTGTTCAGGCTCTCGTCCGTGCTGGTCGTGTTCGAAGATCCTCCGAGGGACAGGCCGTGCAGCACATACTAGATCAACACAGAAAGAACACGGATCGTCTGAGACAAGCAGAGGAAGGGTGGTGTTGTGGGAACGGAACATTGGAAGATGTTAAAGCAAATATACAAATGAGGCAAGAAGGTGCTCTAAGAAGAGAGAGAGCAGCTGCATATTCACTAACCCAGAAGCAAATGAATTCAAAATCCCGATCACTCTGTTCGGTTTCTCCGAACAACGGGGCTGAATTTGACCGGGGATGGAGTTGGCTAGAGCATTGGATTGCTGCAAAGAGATGTGTCCCCTCTACCCTCAAAATAGATCCAGGACCTTGCTCAGTGAGTGTGTGGAAAAACAATGTCACGACCAGAGTTTCAGCAAAACCTCCTCAAATTGGTAAGTTTTCCCTTCCTCATTCGAGTTCGAGTTTGGAATTCTTTTCGGCTGGAAGCAGATCGACAACTCCAGCAGATGTTAAGATCGAGAGAAAGAGTAGCAATCTCCCAAATTACATGAACTCAACCAAATCGAGCAAGGGAAAGCTGAAATCGAGCAGTCATTTATCCCGACAAGTCCGAAGGCAGTCTGTAGATGATCTCCAATTTAGTGAGTTTTGA 1833 45.5 MWESICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAFNKTWVIGFLMDIFGALLMLRALSLAPVSVIQPVSGCGLAILSIFSHFYLKEIMNAVDWLGIALAGIGTIGVGAGGEEQNSSAISLLRLPWLAFSVSVLFVLLNGWLHSYKSQRREQELMQFEVVEEIIYGLESGVLFGMASVISKMGFLFLDQGFHWMLVPICIFLSACCSGTGFYYQTRTEWFHSLGVFQSLKKLFKHEGVRGFYKGNGASVIRIVPYAALHFMAYEEYRCWVLNNCPALGSGPLIDLLAGSAAGVVDNRRVSDSGLKSFRTQPPYNGIKDPEEHQKSIVMRLVGNVQPSIHGDVRHRNTARRALRALKGVVRIQAVVRGRQVRKQAAVTLRCMQALVRVQALVRAGRVRRSSEGQAVQHILDQHRKNTDRLRQAEEGWCCGNGTLEDVKANIQMRQEGALRRERAAAYSLTQKQMNSKSRSLCSVSPNNGAEFDRGWSWLEHWIAAKRCVPSTLKIDPGPCSVSVWKNNVTTRVSAKPPQIGKFSLPHSSSSLEFFSAGSRSTTPADVKIERKSSNLPNYMNSTKSSKGKLKSSSHLSRQVRRQSVDDLQFSEF 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48956185 48978326 - Bda003568.1 Bda01g01331 1331

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01331 610 ProSiteProfiles Solute carrier (Solcar) repeat profile. 176 277 IPR018108 -
Bda01g01331 610 SUPERFAMILY Mitochondrial carrier 173 302 IPR023395 -
Bda01g01331 610 ProSiteProfiles IQ motif profile. 364 391 IPR000048 GO:0005515
Bda01g01331 610 Gene3D Mitochondrial carrier domain 211 304 IPR023395 -
Bda01g01331 610 Gene3D - 5 118 - -
Bda01g01331 610 PANTHER UNCHARACTERIZED 1 224 IPR008521 GO:0015095|GO:0015693|GO:0016021
Bda01g01331 610 PANTHER MAGNESIUM TRANSPORTER NIPA9-RELATED 1 224 - -
Bda01g01331 610 MobiDBLite consensus disorder prediction 562 610 - -
Bda01g01331 610 MobiDBLite consensus disorder prediction 571 596 - -
Bda01g01331 610 Pfam Mitochondrial carrier protein 232 278 IPR018108 -
Bda01g01331 610 SUPERFAMILY Multidrug resistance efflux transporter EmrE 25 119 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01331 - - - csv:101210517 375.555
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00627 Bda-Chr1:33266195 Bda01g01331 Bda-Chr1:48956185 3.42E-42 dispersed
Bda01g01331 Bda-Chr1:48956185 Bda09g00275 Bda-Chr9:3420580 5.95E-31 dispersed
Bda01g01331 Bda-Chr1:48956185 Bda13g01598 Bda-Chr13:39523926 1.85E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g80 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1281 . . . . . . . . Bda01g01331 . . . . . . . . . . . . . Cpe02g00269 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007177 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01331 Bda_Chr01 FPKM 4.745652 6.543818 12.810546 12.583236 4.717018 6.532818 4.036446 13.204926 14.88283