Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01332 ATGGAAGAAGACGGGGTAGAAAGCCAGTTTAGGAGGATTTGTGTCTTCTGTGGAAGCAACTCTGGCTATAGGAAAGTCTTCAGCGACGCTACTCTTGAATTGGGCAATGAACTGGTTAAAAGAAAGATAAATTTGGTGTATGGTGGGGGAAGTGTTGGATTGATGGGTTTGATATCACAGAGAGTGTATGATGGAGGTTGCCATGTTCTTGGGGTCATTCCCAAAGCTCTCATGCCTCTTGAGATATCTGGCGAAACTGTTGGAGAAGTAAGAACCGTATCGGACATGCACGAGCGTAAAGCAGCTATGGCAAGGGAGGCTGACGCCTTTATTGCTCTTCCTGGTGGATATGGAACGATGGAAGAGCTATTGGAAATGATAACATGGGCTCAACTTGGAATCCACAAGAAGCCCGTCGGGCTGCTTAATGTAGATGGGTATTATAATTGCTTGCTGGCTTTGTTTGACAATGGCGTTGAAGAAGGCTTCATCAAACCCGGTGCTCGGCACATAGTCATCTCTGCTCCCACAGCCAAAGAACTTATGCTGAAACTCGAGGGGGTACATAATTGTTATTTCTTGTTGCAGCAATACACTCCTATCCACAAGCATGTGGCTCCCCATGAAAGCTGGCAGATGGAGCAGCTTGGGAATTATCCGAGTCAAGAAAATTCACAC 678 46.17 MEEDGVESQFRRICVFCGSNSGYRKVFSDATLELGNELVKRKINLVYGGGSVGLMGLISQRVYDGGCHVLGVIPKALMPLEISGETVGEVRTVSDMHERKAAMAREADAFIALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNCLLALFDNGVEEGFIKPGARHIVISAPTAKELMLKLEGVHNCYFLLQQYTPIHKHVAPHESWQMEQLGNYPSQENSH 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 48971097 48972992 + Bda032944 Bda01g01332 1332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01332 226 SUPERFAMILY MCP/YpsA-like 9 184 - -
Bda01g01332 226 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 8 216 - -
Bda01g01332 226 TIGRFAM TIGR00730: TIGR00730 family protein 12 185 IPR005269 GO:0009691|GO:0016787
Bda01g01332 226 Pfam Possible lysine decarboxylase 55 184 IPR031100 -
Bda01g01332 226 Gene3D - 2 187 - -
Bda01g01332 226 PANTHER LOG FAMILY PROTEIN YJL055W 8 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01332 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - qsu:111990251 397.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01332 Bda-Chr1:48971097 Bda03g01719 Bda-Chr3:56692480 3.51E-101 dispersed
Bda01g01332 Bda-Chr1:48971097 Bda01g00295 Bda-Chr1:27824052 2.72E-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g81 . . . . . . . . . . Cma01g01728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00278 Bda01g01332 . . . Bma01g00920 . . . . . . . . . Cpe02g00268 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006617 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01332 Bda_Chr01 FPKM 53.779194 60.00861 34.105652 36.174564 80.564507 70.594673 65.362572 33.953545 32.375252