Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01334 ATAGACGAGGAGAAGGAAGTTCGAAAGAGACTTGCGTTCAAGACGGAATCAAAAACCGAAATACTAGATGACGGTTTCAGATGGAGGAAGTACGGGAAGAAGACGGTGAAGAACAGCCCTAATCCAAGGAACTACTATAAATGTACAATTGAAGGCTGCCCTGTGAAAAAGAGAATCGAAAGAGATGGAAAGGATCCAAGGTTTGTGATTACAACTTACGAGGGTGTTCATAACCATGAGAGTTCATAG 249 42.17 IDEEKEVRKRLAFKTESKTEILDDGFRWRKYGKKTVKNSPNPRNYYKCTIEGCPVKKRIERDGKDPRFVITTYEGVHNHESS 82
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49023935 49024445 + Bda003570.1 Bda01g01334 1334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01334 82 SMART WRKY_cls 22 81 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g01334 82 ProSiteProfiles WRKY domain profile. 17 82 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g01334 82 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 6 80 IPR044810 GO:0003700
Bda01g01334 82 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 6 80 - -
Bda01g01334 82 SUPERFAMILY WRKY DNA-binding domain 16 80 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda01g01334 82 Pfam WRKY DNA -binding domain 23 80 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda01g01334 82 Gene3D WRKY domain 9 75 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01334 - - - pmum:103320597 147.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01334 Bda-Chr1:49023935 Bda13g01591 Bda-Chr13:39487876 1.34E-48 dispersed
Bda01g01334 Bda-Chr1:49023935 Bda12g00951 Bda-Chr12:40590110 7.18E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g677 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda01g01334 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001629 2 5 0 0 2 2 3 2 2 2 2 2 3 2 2 3 2 3 4 2 2 2 2 2 1 2 2 3 5 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15440 PF03106 WRKY 1.40E-25 CL0274 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01334 Bda_Chr01 FPKM 2.837814 3.852799 4.248859 4.520659 5.29224 4.620109 5.664993 3.728623 3.440108