Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01336 ATGTCACCGATTTTCTCGCCCGAAGAAATCAGTGCGATCAACACGACGGTGGTGGTGCAACTGAAGGAGGTTGTTCTCGACAACAGTGACATTTCCAAAGCTCTTCTGGATTATGTATACAGTAATTGCATAAACAACATTGTTGTAGGTGCTTCAGCAAGAAGTGCTCTAGCTAGGAAATTCAAAGGTTACGACGTTCCGACCAACATAATAAATGTTGCCAACACAGCAACACCACCAAGACAGCCATCTCCCATGGCATTTCTTCCTCAAGCTCAGGCTGATAATGGCGACCCGGAAAATGCAGGCAGACCAGGTCAACCTCCGAGGGGAGGATGGAAAAGTGCAGGGGCGAATAACCAAACAAAGGGAATGACACGAGAGAGACCGAGGAGTTCTCTGACGAATATCTCAATGGAGAGCCTTGACCGAGATCTAGAGGCAGAAATGAAGAGATTAAAGTTAGAGCTTAAGCAAACCATGGATATGTATAGCTCAGCTTGCAAAGAAGCAATCTCAGCTAAAAACAAGGTAATTTTATCACTCCATCAATGGAAGGTAGAGGAGGCTCGAAAACTGGAGGAAGTGAAACTTGCAGAGGAGGCAGCTCTTGCCATTGCAGAGATGGAGAAAGCCAAGAAGAGGGCCGAAGAGAAGAATCGGGCATTGGACTGCATTAGCGCACGGTACAGAAAATACAGCATTGATGAGATTGAAACTGCCACTGAGAAATTCTCCGATGACCTGAAGATCGGCGTCGAAGTACTCAGCTGCATAAGGTTTCGCCGGGGAAATACTCCTCCGATATCGTGGAGAAGACGATTCAAAATATCAGCAGAAGTCGCCACAGCTCTCTTGTTTCTCCACCAATCAAAACCTGAGCCTCTCTTAACAACTAAGTCGGATGTGTACTCCGTTTGGTATAATGCTTCTCCAAATCATCCGGCCAAGCCGCCGATGGGTCTGGCTCACCATGTTATGAAACCCGACCTCTGGGCTTCGTTGGCTGATGAGGTGCCTGCATGGGTTTCAGATAAAAGAAACAGAGCATCAGTTGATCGAACTTTGAGTTGGCTCGATGAATGTATCAAGTTAAACTCAACAGGTGGAGCTATTTTTGGAGCAGTTGTTGGAGGGTCATCAATGGAAGAGCGTCTAAGGTGTGCGGAAGAAGTTGCCAAGCGTGATGTATCAGGTTATTGGATAGGAGGTTTTGGGCTTGGAGAGAGCATGGATGAGCGTCCTACTCTCCTTAATGCTGTTACAGATATATTACCAGAGGCAAAACCGCGCATGATTTGCGGGCTTGGACTTCCAGAGGAGGTCTTGCAGGGCATTGCTGCTGGTGTTGACCTTTTCGATTCAACGTATATATACCATCTTACACTTGGAGGGTTTGCTCTAGTCTTTCCACTGGATAGCGTAGAGATGAATCTTTCCAATTTGCAGCTGAACGACACCGGGAATGACCTGACGAAAATTAACATGAGAGCAACAGTATATAGGAAAGATTCTTCGCGGATCGTGGAAGGCTGTAGCTGCTATACTTGCCAGAATCACACAAAAGCTTATATCAATCATTTGCTCAATGTGCATGAGATGCTGGCTCAGATACTTCTAGAAATACATAATACCCATCACTATTTGGGTTTCTTTCGATCGATACGAGAAGCGATAAAGGCCGGAAAGTTTCAGCAATTTCATCAAAATTTTATCGAGAAGAGGCGCGGTCATTTGGCGTTGTCAGCTATGTGTTCATGA 1761 45.77 MSPIFSPEEISAINTTVVVQLKEVVLDNSDISKALLDYVYSNCINNIVVGASARSALARKFKGYDVPTNIINVANTATPPRQPSPMAFLPQAQADNGDPENAGRPGQPPRGGWKSAGANNQTKGMTRERPRSSLTNISMESLDRDLEAEMKRLKLELKQTMDMYSSACKEAISAKNKVILSLHQWKVEEARKLEEVKLAEEAALAIAEMEKAKKRAEEKNRALDCISARYRKYSIDEIETATEKFSDDLKIGVEVLSCIRFRRGNTPPISWRRRFKISAEVATALLFLHQSKPEPLLTTKSDVYSVWYNASPNHPAKPPMGLAHHVMKPDLWASLADEVPAWVSDKRNRASVDRTLSWLDECIKLNSTGGAIFGAVVGGSSMEERLRCAEEVAKRDVSGYWIGGFGLGESMDERPTLLNAVTDILPEAKPRMICGLGLPEEVLQGIAAGVDLFDSTYIYHLTLGGFALVFPLDSVEMNLSNLQLNDTGNDLTKINMRATVYRKDSSRIVEGCSCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKAGKFQQFHQNFIEKRRGHLALSAMCS 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49040706 49049969 + Bda003572.1 Bda01g01336 1336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01336 586 MobiDBLite consensus disorder prediction 114 136 - -
Bda01g01336 586 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 330 575 IPR002616 GO:0006400|GO:0016763
Bda01g01336 586 MobiDBLite consensus disorder prediction 75 136 - -
Bda01g01336 586 SUPERFAMILY tRNA-guanine transglycosylase 325 574 IPR036511 GO:0006400|GO:0016763
Bda01g01336 586 Coils Coil 199 229 - -
Bda01g01336 586 Gene3D - 322 576 IPR036511 GO:0006400|GO:0016763
Bda01g01336 586 Hamap Queuine tRNA-ribosyltransferase accessory subunit 2 [QTRT2]. 118 570 IPR028592 GO:0006400|GO:0008479
Bda01g01336 586 Coils Coil 139 163 - -
Bda01g01336 586 Pfam Queuine tRNA-ribosyltransferase 325 576 IPR002616 GO:0006400|GO:0016763
Bda01g01336 586 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE ACCESSORY SUBUNIT 2 325 579 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01336 K15407 QTRT2, QTRTD1; queuine tRNA-ribosyltransferase accessory subunit - qsu:112006576 430.639
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01336 Bda03g00481 CCT
Bda01g01336 Bda13g01593 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01336 Bda-Chr1:49040706 Bda01g01369 Bda-Chr1:49565629 9.11E-92 dispersed
Bda01g01336 Bda-Chr1:49040706 Bda01g01340 Bda-Chr1:49098768 3.39E-145 proximal
Bda01g01336 Bda-Chr1:49040706 Bda13g01593 Bda-Chr13:39499540 5.06E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g112 . . . . Bpe02g01552 . . . Cmo05g00439 Cmo12g00590 . Cma05g00422 . Car12g00600 . Cpe07g00567 . Bhi04g01477 . . . . . Lcy13g2196 . . . . . . . . . Cone17ag0935 Cone20ag0278 . . . . . Blo18g00275 Bda01g01336 Bda13g01593 Bpe14g00270 . . Bma02g00535 . . . . Cma12g00651 . Car05g00359 Cpe11g00362 . . . . . . . . Cla08g01004 . . . . . . Lsi08g00856 . Chy03g00674 .
Vvi18g450 . Blo12g00713 . Bda03g00481 . Bpe04g00435 Bma04g00448 . . . . Cma09g00573 . . . Cpe06g00437 . . . . . . . . . . . . . . . Cone4ag1321 . . . Lsi04g02253 Csa03g04464 Chy04g00237 . . . . Bda01g01336 . . . . Sed14g0067 . Cmo09g00560 . . . Car09g00502 . . Bhi09g02464 Tan01g3814 Cmetu04g2961 . Hepe01g2146 Mch11g0684 . Cla11g01400 Cam11g1456 . . Clacu11g1617 Cmu11g1434 . . . . Cme04g00265
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009870 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01336 Bda_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 5.825043 6.117077