Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01339 ATGGCACTGAGCTGTATAGACATTGCTCTCTCCGACTTCTATTCCTCCCACGGTGGTTTCAAGACCAGGCTCGTGCTTAATACCAGAGACTCCATGAAAGACGTTGTCGGAGCCGCTGCTGCAGGCCTAGACCTTGTGAAGAATGCGAAGGTGGAAGCTATAATCGGACCAGTGAGTTCAATGCAAGCTAACTTCTTGATTGAACTCGGAGAAAATGCTCATGTCCCCATTATTTCATTTTCGGCCACGAGCTCTTTGCTAGCATCTCTGGGGAGTTCATATTTTTTCCGCGTCGCGCAAAACGACTCGTCTCAAGTTCAACCCATTTGTTCAATTCTCAAAGCTTTTGAGTGGAGAGAGGTCGTGCCTATCTACGTAGATAATGCGTTTGGGCAGGGAATTATACCCTACTTGGCCGATGCATTACAGGACATAGACGCTCTCATGCCTTATAGAAGTGCCATTCCTTCGTCAGCCTCTGATGATCAAATTGCAGCAGAGCTATACAAGTTGATGAGCATGCAAACTAGGGTTTTTGTTCTCCATCTCCTGCCTAGTCTGGCTTCAAGGATTTTTAAAATGGCGAAAGAGATTGGGATGATGAGCGAAGGCTATGTTTGGATCATGACCGATTCTATCACTAATCTTTTGACTCAAATAGACGAGTCAGATTTCGATTCGATGCAAGGGGTGTTGGGCATCAAGACTTACATTCCGAGATCGACCAAGCTAGATGATTTCAAAGTGAGATGGACAAGCAAGTTTCGGCAAGATAATCCGACCGATCTCAATACTCAACTGAATGTTTTTGGACTGTGGAGCTATGATGCGGCTTGGGCATTAGCCATGGCTGTCGAGGCAACCCTTTCGACATCTAACCTTGGCTATCAAAAATCCAGTAACTCAACCAATGGAACTAATCTTGACAATGTCGGGATTTCACTGAACGGCCCGAGAATTCGCGACCAGCTTTCCAAGACGACATTTACAGGACTTAGCGGGAATTTTAACCTTGTCGACGGCCAATTGCAGTCTACAACTTTTGAAATAGTGAATATAAATGGTCATCTAGGGAGACCCATTGGATATTGGACACCCGAAACTGGTCTCTCAAAAAGTTTGGGTTCATCTTCTTCGGCTGGAGCAACTCTAGGGACAATCCTATGGCCAGGAGATTCTACTTCAATTCCAAATGGATGGGAGATTCCAACAAATGGTAAGAAACTGAGAGTAGGAGTTCCTTACAACGACGGATTCAGCAAATTTGTGAAAATAACAAATGATTCCATCTCAAATGCTACAACGGTCAAAGGCTACTGCATAGACATCTTCAAAGCAATTCTTAAGGAGTTACCTTACGCAATTGTTCCAGACTTCATCCCGTTTAACCCCCCATTCATTCGTTTATTTGTTTCACACTATCTTGTTGAGCTTCGTGATAATTGTGGTTTCTGGATGGACAGAACTTCGATGCAGTGGTGGGGGACGTGA 1491 44.53 MALSCIDIALSDFYSSHGGFKTRLVLNTRDSMKDVVGAAAAGLDLVKNAKVEAIIGPVSSMQANFLIELGENAHVPIISFSATSSLLASLGSSYFFRVAQNDSSQVQPICSILKAFEWREVVPIYVDNAFGQGIIPYLADALQDIDALMPYRSAIPSSASDDQIAAELYKLMSMQTRVFVLHLLPSLASRIFKMAKEIGMMSEGYVWIMTDSITNLLTQIDESDFDSMQGVLGIKTYIPRSTKLDDFKVRWTSKFRQDNPTDLNTQLNVFGLWSYDAAWALAMAVEATLSTSNLGYQKSSNSTNGTNLDNVGISLNGPRIRDQLSKTTFTGLSGNFNLVDGQLQSTTFEIVNINGHLGRPIGYWTPETGLSKSLGSSSSAGATLGTILWPGDSTSIPNGWEIPTNGKKLRVGVPYNDGFSKFVKITNDSISNATTVKGYCIDIFKAILKELPYAIVPDFIPFNPPFIRLFVSHYLVELRDNCGFWMDRTSMQWWGT 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49068838 49071085 + Bda003575.1 Bda01g01339 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01339 496 Pfam Receptor family ligand binding region 4 355 IPR001828 -
Bda01g01339 496 Gene3D - 103 266 - -
Bda01g01339 496 SUPERFAMILY Periplasmic binding protein-like I 5 400 IPR028082 -
Bda01g01339 496 SUPERFAMILY Periplasmic binding protein-like II 382 461 - -
Bda01g01339 496 CDD PBP1_GABAb_receptor_plant 1 367 IPR044440 -
Bda01g01339 496 PANTHER OS06G0188250 PROTEIN 1 463 - -
Bda01g01339 496 PANTHER OS06G0188250 PROTEIN 1 463 - -
Bda01g01339 496 Gene3D - 303 407 - -
Bda01g01339 496 Gene3D - 408 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01339 Bda-Chr1:49068838 Bda01g01358 Bda-Chr1:49351516 0 dispersed
Bda01g01339 Bda-Chr1:49068838 Bda01g01357 Bda-Chr1:49303673 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01339 K05387 - qsu:112030675 546.584