Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01344 ATGGGCGAGGCTGCTCCCATTTTCCTGGTTAATGGCTTGTCTAAGCTTTGTGACGAAATTGGTTCCCAACATGACGATGATTTTTGTAGCGATCATTGTTGTTGGGACGACGAAGTGAATAGTAGAGATGGTTGGTACGAAGAAGTTATTGACAATGATCTGAGATGGTCTTTTGCTCTGAATCGTGTTCTGCATAAAGGAACGAGCGATTACCAGGAAATAGCTCTAATTGATACAAAGCGTTTTGGGAAGGCATTGATGATTGATGGGAAGATGCAGAGTGCAGAAGTGGATGAATTTATTTATCACGAGTGCTTGATTCATCCTCCTCTTCTATATCATTCCGAGCCAAAAACCATTTTCATCATGGGAGGCGGGGAAGGTTCTTCTGCAAGAGAAGCACTCAAGCATAACTCTATAGAGAAAGTTGTTATGTGTGATATAGACAAGGAAGTGGTGGATTTCTGTCGAAAATATTTGACTGTAAATCAGGAAGCCTTTCGCCATAAGAAGCTTGAACTTATCATTAATGATGCAAAGGCTGAATTAGAGAATAGGACAGAAAAATTTGACGTTATAGTCGGAGACTTAGCGGACCCGGTTGAAGACGGGCCCTGTTATCAACTGTACACAAAATCCTTCTACCAGAAAATTCTCAAGCCCAAGCTCAATGAAAATGGCATTTTTGTAACTCAGGCTGGGCCAGCAGGTATTCTCACCCACAAAGAGGTCTTCACTTCCATATACAACACAATCAAGCAAGTCTTTAAGAATGTGGCGGTTTACACCGCACATATACCATCTTTTGCAGACACATGGGGATGGGTTATGGCATCTGACAAACCATTCTCCATCGAATGTGGAGAGATCGATCGGAGAATCGAGAAGAGAATCGACGGGGAGTTATTCTTCTTAAACGGTGCTGTTTTCGTCTCATCCACGACTATGAATAAGACCGTTTCATCATCGCTATTGAAAGAAACTCATGTCTACACGGAAGAAAATGCAAGGTTTATTCATGGACATGGTGTGGCTCGCAGACATTGA 1047 42.22 MGEAAPIFLVNGLSKLCDEIGSQHDDDFCSDHCCWDDEVNSRDGWYEEVIDNDLRWSFALNRVLHKGTSDYQEIALIDTKRFGKALMIDGKMQSAEVDEFIYHECLIHPPLLYHSEPKTIFIMGGGEGSSAREALKHNSIEKVVMCDIDKEVVDFCRKYLTVNQEAFRHKKLELIINDAKAELENRTEKFDVIVGDLADPVEDGPCYQLYTKSFYQKILKPKLNENGIFVTQAGPAGILTHKEVFTSIYNTIKQVFKNVAVYTAHIPSFADTWGWVMASDKPFSIECGEIDRRIEKRIDGELFFLNGAVFVSSTTMNKTVSSSLLKETHVYTEENARFIHGHGVARRH 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49151506 49154348 - Bda003581.1 Bda01g01344 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01344 348 PANTHER BNAA02G04280D PROTEIN 43 348 - -
Bda01g01344 348 CDD AdoMet_MTases 124 232 - -
Bda01g01344 348 Gene3D Spermidine synthase, tetramerisation domain 43 95 IPR037163 -
Bda01g01344 348 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 43 348 - -
Bda01g01344 348 Hamap Polyamine aminopropyltransferase [speE]. 44 326 IPR001045 GO:0003824
Bda01g01344 348 Pfam Spermidine synthase tetramerisation domain 44 96 IPR035246 -
Bda01g01344 348 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 43 280 IPR030374 -
Bda01g01344 348 Coils Coil 169 189 - -
Bda01g01344 348 Gene3D Vaccinia Virus protein VP39 96 348 IPR029063 -
Bda01g01344 348 Pfam Spermine/spermidine synthase domain 99 278 - -
Bda01g01344 348 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 45 320 IPR029063 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01344 Bda13g01302 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01344 Bda-Chr1:49151506 Bda13g00130 Bda-Chr13:1694281 1.88E-147 dispersed
Bda01g01344 Bda-Chr1:49151506 Bda10g01018 Bda-Chr10:44342228 1.52E-35 transposed
Bda01g01344 Bda-Chr1:49151506 Bda07g01594 Bda-Chr7:29583406 7.98E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01344 K18787 - mnt:21401549 536.954