Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01345 ATGGGTTCGGGGAGAAACGAAGGGCCTGAGTCGGGCGATCCAGGTCCGAGTGGAGATGCGATTCCCTCCGATTCGAACGAGCCACGGCAGTTTCCTCCAGCTGCTCAACCGGAAATAATGAGAGCTGCCGAGAAAGACGACCAATATGCCTCTTACGTCTACGACGCCTGTCGCGACGCTTTCCGTCACCTTTTTGGTACAAGACTTGCTATGGCTTACCAGAATGAGACAAAACTTCTTGGACAGATGCTTTATTATATTTTAACAACTGGTTCAGGGCAGCAAACTCTGGGAGAAGAATACTGCGATATCACTCAGGTTGCAGGGCCTTACGGACTACCTCCAACCCCAGCAAGACGTGCTCTTTTCATTGTATACCAGACTGCTGTTCCATACATTGCAGAACGAATTAGCTCCAGAGTTGCATCACGTGGCATTATTCTTGCTGATTCACAGTCTGATGAGTTTTACAGAAATAGTGTTCCAATGGAGAACATTAATCAGTCTACGGCAAGTGAAATCACTTTGGCCTCTGAGCCAGCGTCTTCTCTTCCTGTTTATAGCAGGCTGAGGGAGAAATTCAATGAACTTTGTCTCTATGTGACTCAAAAATGGCCTTCGGTGCTGCCCATAGCTCGTGAATTTTTGCAGTTGGTACTGCGGACTAATCTCATGTTCTTCTATTTTGAAGGTCTTTATTATCATATATCAAAACGCTCTGCGGGAATCCGTTATGTGTTCATTGGCAAACCATCAAATCAAAGACCTAGATATCAAATATTGGGTGTATTTCTATTGATTCAACTTTGTATCATTGCTGCTGAAGGGCTTAGACGCAGTAATTTATCATCTATTGCGAGTTCAGTTAATCAGACATCCTTTGGGACCCACCATTCTGCAGCAGGTCGAGGTTTGCCCATTTTAAATGAGGAAGGCAGTTTGATATCTGTTGATGGGAGTAGAGGAAACTGGATTTCTGATTCTTCAACCACCTCCGAGGCTCAAGCAGTTGGTGGAATTAGCAAATGCACTCTATGCCTGAGTGATCGCCATCATCCCACAGCTACATCTTGTGGCCATGTGTTCTGCTGGAACTGCATTATGGAGTGGTGCAACGAAAAGCCTGAATGCCCACTGTGTCGAGCTCCTATTACTCATTCAAGCCTAGTTTGTCTATATCATTCAGATTTTTAG 1194 45.06 MGSGRNEGPESGDPGPSGDAIPSDSNEPRQFPPAAQPEIMRAAEKDDQYASYVYDACRDAFRHLFGTRLAMAYQNETKLLGQMLYYILTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAVPYIAERISSRVASRGIILADSQSDEFYRNSVPMENINQSTASEITLASEPASSLPVYSRLREKFNELCLYVTQKWPSVLPIAREFLQLVLRTNLMFFYFEGLYYHISKRSAGIRYVFIGKPSNQRPRYQILGVFLLIQLCIIAAEGLRRSNLSSIASSVNQTSFGTHHSAAGRGLPILNEEGSLISVDGSRGNWISDSSTTSEAQAVGGISKCTLCLSDRHHPTATSCGHVFCWNCIMEWCNEKPECPLCRAPITHSSLVCLYHSDF 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49158843 49166832 - Bda003582.1 Bda01g01345 1345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01345 397 MobiDBLite consensus disorder prediction 1 35 - -
Bda01g01345 397 ProSiteProfiles Zinc finger RING-type profile. 343 381 IPR001841 -
Bda01g01345 397 CDD RING-HC_PEX10 342 381 - -
Bda01g01345 397 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 27 394 - -
Bda01g01345 397 SUPERFAMILY RING/U-box 342 386 - -
Bda01g01345 397 Pfam Ring finger domain 342 381 IPR001841 -
Bda01g01345 397 PANTHER PEROXISOME BIOGENESIS FACTOR 10 27 394 - -
Bda01g01345 397 SMART ring_2 343 380 IPR001841 -
Bda01g01345 397 Pfam Pex2 / Pex12 amino terminal region 46 279 IPR006845 -
Bda01g01345 397 ProSitePatterns Zinc finger RING-type signature. 358 367 IPR017907 -
Bda01g01345 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 394 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01345 K13346 PEX10; peroxin-10 - tcc:18588136 627.861
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00074 Bda-Chr1:11943656 Bda01g01345 Bda-Chr1:49158843 7.90E-08 dispersed
Bda01g01345 Bda-Chr1:49158843 Bda06g00311 Bda-Chr6:5192420 4.66E-12 dispersed
Bda01g01345 Bda-Chr1:49158843 Bda07g00997 Bda-Chr7:11783352 1.08E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g148 . . . . Bpe02g01557 . . . . . Cma01g01704 . Car09g00310 . . . Cpe06g00394 . . . . . . . Cla05g01808 . . . . . . . . Cone17ag0941 Cone20ag0284 Lsi04g01391 . . . . . Bda01g01345 . . . Bma01g00912 . . Cmo01g01807 Cmo09g00361 Cma09g00362 . Car01g01322 . . Cpe02g00287 Bhi09g02373 . . . . . . . . . . . . . . . . Cme07g00180
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006593 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 38