Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01346 ATGAGGATTTGGTGTTGCTCATGCTTTACTGCGGGAGAAGACGAAGAGGAAGAGGAACGATTTAGAGAGATTGCGATGAGGGAGGGTGTGGAAGATGAGGGAAATCCCGAGACTATTGTTGGTAAATTCGAAGATGTTAGTAGATTAGGGCTTGCTGTTGACAGGCCCGCGCCTGATGACCAAGCTCAGTTGAGATTGTCTGAGGAGATGGTTAGAGCAACGCGAGGTCATTGTGAAGTGGGATTAAGTTCCCATGTCCTTGACCCATGGAAGTTTCAGTTTTGGGTTTCGAGTCAAGCTGAGGGTGAAAGCAGTAACAGTTCGGCTCCAGTCTCAGCAATTCGGGTGGGAGGAAATGGCAACGAGGAGTGTGATCTTGATCCTCACCACAAGCGTGCCAAAGTTCACTCGGATTCTTGTGTGTGCTCCTATTCTCCCACATTTCCTTCAGATGCTGGAAACACTTCGTGCATGGATTTGAATCTTGATATTAGGCATGGATCACTAGTTACATCTAAAAATGAGAGTGTATATCAAACCATTACATTGATTAATGCTGGTGGTGGTTTTCCTTTCGGCTACAGCAGCGGGAAAGATGAGATTAAGTGCATTAAAACAGAGGATTTTGAAATTCGGATGGATCTCACAGACGACCTATTGCATATGGTTTTCTCTTTCTTGGACCACATAAATCTTTGTCGAGCTGCCATTGTATGTAGGCAATGGAGAGTGGCTAGTGCTCATGAAGATTTCTGGAGATGTTTGGATTTTGAGAATAGAAACATATCTGTTGACCAATTTGAGGACATGTGTCAGCGATACCCCAAGGCGACAGAAGTTAATATATCTGGTGCTCCTGCTATTCACTTGCTTGTTATGAAGGCAGTAGCTTCATTGAGAAATCTGGAAATCTTAACTTTGGGAAGAGGTCTATTGGGGGACACATTTTTTCATGCCTTAGCAGATTGTCAGACATTGAAGAAGTTGACTGTTAATGATTCTACTCTTGGTAATGGTATTCAAGAAATACCTATAAACCATGATCGATTGCGTCATCTTTATTTGACAAAATGTCGTGTCATACGCATATCTGTCAGGTGCCCACAACTTGAGACATTGTCTTTGAAACGAAGCAACATGGCACAAGCTATACTCAATTGCCCTCTTCTGCGCGATTTAGATATAGGCTCTTGCCACAAGCTTTCTGATGCTGCAATTCGTTCAGCTGCAACTTCATGTCCTCAGTTAGAGTCTCTGGACGTGTCAAATTGTTCGTGTATTAGTGATGAAACAATACATGAAATAGCTAGCACTTGTGCAAATCTGCATATTTTAAATGCTTCATACTGCCCTAATATATCTCTGGAGTCTGTTGCGCTGGCAATGTTGACAGTTCTTAAGCTTCATAGCTGTGAGGGTATTACTTCAGCATCAATGTTAGCAATATCTCGTTGTTCTATGCTTGAGGTTTTAGAGCTTGACAATTGTAGCCTTTTAACCTCTGTGTCCTTGGATCTCCAACGCTTGCAGAGTATTCGTCTGGTTCATTGTCGCAAATTTGCTGATCTAAATTTACGGAGTCTAGTGCTATCGTCCATTATGGTGTCTAATTGTCCTGCACTCCACCGCGTGAACATCACATCCAATGCACTTCAAAAATTAGCATTGCAGAACCTAGAAAACTTAACCACCTTGGCTTTGCAATGCCAAAGTTTACAGGAAGTAGACCTCACTGACTGTGAATCTCTCTGGAATTCTATATGTGATATTTTTGGTGATGATGGCGGGTGCCCGATGCTGAAATCTTTAGTTCTTGATAACTGTGTGAAGTTGACAGAAGTCCGATTCTGCAGTACCTCCTTAGTTAATCTTTCTCTTGTTGGCTGTCGAGAGATCACCACTCTACAGCTTACATGCCCCTTCCTCGAGAGAGTGTGTTTAGATGGATGTGATCGACTTGCAGTGGCGTCATTTTTTCCAGTTGGTCTAAAGTCACTTAATCTGGGTATATGTCCCAAATTGAATGAACTTAGAATTAAAGCCCCTCATATGGCTATACTAGAGCTGAAAGGCTGTGGACGGTTATCTGTAGCATCCATTGATTGTCCTCTGTTATCATCACTAGATGCTTCCTTTTGCAGCGAACTGAGGGATGACTGCTTGTCTGCAACGACTGCTTCGTGTCCGCTGATTGAGTCTTTAATATTGACGTCGTGTCAATTAGTTGGTTCAGATGGTCTGTACTCGTTGGGTCATCTTCGACGTTTAATCATTCTTGACTTATCGTATACATATTTGATGAACTTGCATCCTGTCTTCGAGTCTTGTTTGCGACTTAAGGTGTTGAAGCTACAAGCTTGTAAGTGCTTAACTGATTCATCACTGGAACCTCTTTACAAAGAAGGTGCTCTTCCAGCTTTGCAAGAGTTGGACTTATCTTATGGGACTTTCCGCCAGTCTTCTATAGAGGAGCTTCTTACTTGCTGCACCCATCTCACGCATGTTAGCCTGAATGGCTGTGATAATATGCATGATCTGAATTGGAGCTACCATGACAGACTGTCGGAGTTGAATGGTGAAGATATATCATCTTGTCAGTTTTCTGTCACAGATGTCATGGAGCCAACTGAGCAAGCAGATCGTTTACTGCAGAACCTCAACTGTGTTGGCTGTCTAAATATTAGGAAAGTTCTTATTCCCCCAACTGCGCGGTGTTCCCATCTGTCATCTCTGAACCTTTCTCTATCTTCCAATTTGAAGGAAGTTGATGTTGCTTGCTTGAATCTGTGCTTTCTCAATTTGAGGTTTGAATCTATCCCTGCTTGTGAGTTGAAGTTTATCCTTGATTTCTACGCTTATAAATTCCTCAATTTTTCTTTCAGCAACTGTTGCTCTTTGCAAGTTTTGAGATTGGACTGTCCAAAATTGAGTAGTCTCTTTCTTCAGTCTTGCAATATCGACGAAGAGGCTGTCGAAACTGCCATAGCCAAATGTAGCATGCTTGAGACCCTGGACGTCCGCTTCTGTCCGAAAATTTCCTCGATGAGCATGATTCAAATTCGGATGGCATGCTCGAGTTTGAAGCGGATCTTCAGCAGCCTCCTGTCTTCCTCATGA 3117 42.7 MRIWCCSCFTAGEDEEEEERFREIAMREGVEDEGNPETIVGKFEDVSRLGLAVDRPAPDDQAQLRLSEEMVRATRGHCEVGLSSHVLDPWKFQFWVSSQAEGESSNSSAPVSAIRVGGNGNEECDLDPHHKRAKVHSDSCVCSYSPTFPSDAGNTSCMDLNLDIRHGSLVTSKNESVYQTITLINAGGGFPFGYSSGKDEIKCIKTEDFEIRMDLTDDLLHMVFSFLDHINLCRAAIVCRQWRVASAHEDFWRCLDFENRNISVDQFEDMCQRYPKATEVNISGAPAIHLLVMKAVASLRNLEILTLGRGLLGDTFFHALADCQTLKKLTVNDSTLGNGIQEIPINHDRLRHLYLTKCRVIRISVRCPQLETLSLKRSNMAQAILNCPLLRDLDIGSCHKLSDAAIRSAATSCPQLESLDVSNCSCISDETIHEIASTCANLHILNASYCPNISLESVALAMLTVLKLHSCEGITSASMLAISRCSMLEVLELDNCSLLTSVSLDLQRLQSIRLVHCRKFADLNLRSLVLSSIMVSNCPALHRVNITSNALQKLALQNLENLTTLALQCQSLQEVDLTDCESLWNSICDIFGDDGGCPMLKSLVLDNCVKLTEVRFCSTSLVNLSLVGCREITTLQLTCPFLERVCLDGCDRLAVASFFPVGLKSLNLGICPKLNELRIKAPHMAILELKGCGRLSVASIDCPLLSSLDASFCSELRDDCLSATTASCPLIESLILTSCQLVGSDGLYSLGHLRRLIILDLSYTYLMNLHPVFESCLRLKVLKLQACKCLTDSSLEPLYKEGALPALQELDLSYGTFRQSSIEELLTCCTHLTHVSLNGCDNMHDLNWSYHDRLSELNGEDISSCQFSVTDVMEPTEQADRLLQNLNCVGCLNIRKVLIPPTARCSHLSSLNLSLSSNLKEVDVACLNLCFLNLRFESIPACELKFILDFYAYKFLNFSFSNCCSLQVLRLDCPKLSSLFLQSCNIDEEAVETAIAKCSMLETLDVRFCPKISSMSMIQIRMACSSLKRIFSSLLSSS 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49168364 49175417 + Bda003583.1 Bda01g01346 1346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01346 1038 SMART LRR_CC_2 639 664 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 460 485 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 506 531 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 998 1023 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 776 801 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 597 627 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 728 753 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 413 438 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 905 930 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 387 412 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 973 997 IPR006553 -
Bda01g01346 1038 SMART LRR_CC_2 702 727 IPR006553 -
Bda01g01346 1038 Gene3D Ribonuclease Inhibitor 764 944 IPR032675 -
Bda01g01346 1038 Gene3D Ribonuclease Inhibitor 207 457 IPR032675 -
Bda01g01346 1038 SUPERFAMILY L domain-like 295 652 - -
Bda01g01346 1038 SUPERFAMILY F-box domain 213 284 IPR036047 GO:0005515
Bda01g01346 1038 PANTHER OS10G0396666 PROTEIN 122 998 - -
Bda01g01346 1038 Gene3D Ribonuclease Inhibitor 945 1031 IPR032675 -
Bda01g01346 1038 Gene3D Ribonuclease Inhibitor 458 763 IPR032675 -
Bda01g01346 1038 PANTHER OS10G0396666 PROTEIN 122 998 IPR044703 GO:0010252|GO:1905393
Bda01g01346 1038 SUPERFAMILY RNI-like 722 1016 - -
Bda01g01346 1038 SMART fbox_2 215 255 IPR001810 GO:0005515
Bda01g01346 1038 Pfam F-box-like 217 257 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01346 - - - qsu:111997858 1356.27
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01346 Bda13g01586 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01346 Bda-Chr1:49168364 Bda03g01248 Bda-Chr3:17846906 2.04E-08 dispersed
Bda01g01346 Bda-Chr1:49168364 Bda13g01586 Bda-Chr13:39389216 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g161 . . . . Bpe02g01559 . . . . . . . Car09g00313 . . . Cpe06g00258 . . . . . . . Cla05g01626 . . . Clacu05g1726 . Cre05g1739 . . . . Lsi04g01388 . . . Blo17g00273 Blo18g00056 Bda01g01346 Bda13g01586 Bpe14g00280 . Bma01g00911 Bma02g00548 Sed05g1794 Cmo01g01810 . . . Car01g01319 . . Cpe02g00290 Bhi09g03083 Tan01g3471 Cmetu07g1629 . Hepe01g1916 Mch11g0451 . . . . . . . . . . . Cme07g00176
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004724 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 4 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01346 Bda_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.291818 0.0