Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01354 ATGAAACATAGAGATCAACTATTTGATCTTATTAAAAGTGAGCACTCTATGATGGATGCAGCTATGAGTAGGGATCAGGACACATGGAATTTGAAACCATGTTCTCCTGAGGTGAAAAATGTGTATGTTGTGGAAGCAAGTGGAGCATCAGTTACTGCAGATTCTAGTGTCAGTCTTATACATCTATATTGTGAAAAGCTGCCTGGTGATAAGTATTTCACACCAAAGCCAATCTTCCAGATTTCGAATGTTGGAGGATCTTATAAGTGTAAACTGACCCTGCCTCCAAATGCACCTTTTCAGACTATAGTTGGTCCGTCTTGTAGGAGTTCTCATTTGTCTAAGCAGCTTGCGTGCTTGGAAGCATGTAAGAGACTGCACGAAGTGGGTGGGCTGGATGATCATTTCCTCCCCTGCATGGGAGACTCTTCAAAGTTTGATGTAATTGAAAAAACTACTAAACTGAGTGGTGCAGGTACTAAAAAAAGAAAGGAACTGCATGGAACAACTCAAATTCATGCATTGTCCGGAACGTGGGGTGAAAATCTTGATGGTGCCGTTTTTCATGCCTACAAATTTTCATTCTCCTGTAATGCTGTTGGCGAGTTTTTTTCTGGGTTTGTACTTCTCCTGCAATCAAAGCTTGATGATGATGTGGGAAATATTGAACTGGAACTTTACTTAGTCTCAAAAATAGTCAAGACTTCTGTTTTATCATGTGGAGAATTTCATATGAGTGCCGAGCAGATAATTAAATCAAAGGCCTTTCAAGAAATTTTTTTTACTGGAATGTTTGGAAGATTGTTTGCTGGATCAAAAACAGCTGGGACGCATAGAGAATTTTTACTCCAGAAAGAAGCACAATCTCTTTGGAAACCACATAATTCGTATTTCCTTTTACCGCTGCAACGACTGAATGTGGCAAATGTGGATTCATGGGAAATAGATTGGACTGGTATCAGTTCTTGTGCTTCTTTAATAGAATTTTTTGTGAAAAACTCTTCATTAGGAACTGATAATTTCTGTGGCGGGAAAGTGGAAACTTCAGACTTGAGCGAGAAAGATTGCAGTGTGTCCAGTGTAATATCTTTTGCTAATTGTAATGTTGCTATAGAAGGCCTGAAAGATATTGTAGTATTGGCTATTCACACTGGAAGGATATATTCAATTGTGGAAGCTGTAAGAGGCACATCTGCGGAGAGCACTTTTGATGGAAAGCTAGATGGTACACCATCTGAATACACTACCTTTTCTGATTACTTCAACAAAAAGTATGGAATTGTATTGGAATATCCGAAACAGCCACTGCTGCGGTTAAAGCAAAGCCATAATCCGCATAATCTTCTTGTCAACTTCAATGATATAGGTGACGAGACATTGAAATCTGACATGGTTACCAGAAAGCCACAGACGCATGTGAACATGCCACCAGAGCTTTTGTTCAGGATTGATATTCCAAGAGAAGTTTTAAAGTCATCATATTTACTTCCATCTTTGATGCATCGTTTAGAGTCCCTGATGTTATCTAGCCAGCTGAGGAAGGAGATTGGTGGTCATGCAAGTAGCTTTAAAATATCAAGCCATTTGATTTTAGAAGCACTTACAACACTTAGATGTTGTGAAAGTTTTTCTATGGAGCGTTTGGAATTGCTTGGTGACTCCGTTTTGAAGTATGCTGTTAGCTGCCACCTCTATCTCAAACATTTTAACAAACATGAGGGACAGTTATCCGGCCTGCGGCAATTGGCTGTCTGCAATGCAAATTTACATAAATTGGGAACAAGCCGTAATTTGCAGGGGTATATACGTGATAGTCCATTTGATCCACGTCGCTGGTGTGCACCCGGACAGCGTCGTACTCGTCACGTTCCTTGTAAATGTGAACTCGATACTTTAGAAGTGCCTTCAAACTCCAAATTCCAAGTTGAAGACCCAAAACTTGTGTTGGGAATATGCTGTGACAAGGGTCACAGATGGATGATTTCAAAAACTATAGCTGATTGTGTTGAATCTCTCATTGGGGCTTATTATATTGATGGGGGGCTGATTGCTGCATTACATGTGATGAAGTGGTTTGGTATAGATGCTGAACATGATCCCCCATTATTATTTGATGCTATTGCAACTGCTACCCTGAGGCCATACATTCCAAAAATGGATGATATTGCAACCTTAGAATCAAAGATTGGATACCAGTTTGTTACCAAAGGGCTTTTGCTCGAGGCTATAACTCATGGGACTGAAGAAGAGCAAAGTCTTGGTTACTGTTACCAGAGGCTCGAGTTTCTTGGTGATTCAGTGTTGGACCTGCTTATTACTAGGCATCTTTTTCATAACCATGGCGAAATTGACCCTGGTGAAATGACAGACTTGCGCTCAGCTTCTGTTAGTAATGAAAATTTTGCTCAAGTGGCTGTGAGACATAATTTTCACCCTCATCTTCAACATTGCTCCTCGTTGCTTCTAAGCCAAATAACAGAATATGTTGCACATTTAGCTGAATCTCATGGTGGTGCGAGAACTTTCCATGGAACCAAGGTCCCCAAGGTTCTTGGAGATTTGGTGGAAAGCATTGCAGGGGCAATATTGATTGATACTAAGCTCAATCTTGACGAAGTGTGGAGAATATATAAGCCACTTTTGTCACCCATTGAGACCCCTGATAAACTTGAACTGCCACCTCTGCGCCAGTTGCACCAGTTATGTGACTCTCTCGGGTATTTTGTGAATGAAAAATGCACAAGAAAGGGAGAATTCGTGCGTGCTGAGCTTAGGTTACAGCTAAACGATATCCTCTTGATCGGGGAGGGATATGAACGTAGCAGAAAAGTTTCCAAAGGACAAGCAGCTTCACGTCTCTTGGATGAACTTAAGAAGAGGGGAATTTCATTCTCTTATGGTTCCAAGAAGAGAAAGATTTATGAAGATGTTGGCGATTTGCCTTGCCAAGATACGAAGAATGATATCTCCGGCCAAAAAACTAATGGTGTCTCTTTAGAGCTTAATGGCCAGGAGAACCATAGGATGACCGAAACTCAACTGTCTGCACAGCCAACTGGGGTTTCTTGCAATGGAGAATCATCTTGTAGTCTCCCAGCTGTAGCAATTAACATGAAAAAAGGAGGACCTCGAAACTCTCTCTTTAACCTATGTAGGAGCCTGGATTGGCCAATGCCAACGTTCAAATCATCAGAACATAGATCAAGGACTCCAATTGAATTTGATGAAGGTTCTGAAAAGAGAAAGGTATATAATAGTTTCCGGTCGAATGTGATCTTGCACATACCCAACTCTGGTAGCATTGAATGTGAAGGAGATGCTAAAGCAGACAAGAAGAGTTCACTCGATTCAGCTGCCGTAGCCTTGCTTTACAAGCTTCATCTCCAGGGAAAAGTCATTGTCGGTGATCCCTGA 3414 41.01 MKHRDQLFDLIKSEHSMMDAAMSRDQDTWNLKPCSPEVKNVYVVEASGASVTADSSVSLIHLYCEKLPGDKYFTPKPIFQISNVGGSYKCKLTLPPNAPFQTIVGPSCRSSHLSKQLACLEACKRLHEVGGLDDHFLPCMGDSSKFDVIEKTTKLSGAGTKKRKELHGTTQIHALSGTWGENLDGAVFHAYKFSFSCNAVGEFFSGFVLLLQSKLDDDVGNIELELYLVSKIVKTSVLSCGEFHMSAEQIIKSKAFQEIFFTGMFGRLFAGSKTAGTHREFLLQKEAQSLWKPHNSYFLLPLQRLNVANVDSWEIDWTGISSCASLIEFFVKNSSLGTDNFCGGKVETSDLSEKDCSVSSVISFANCNVAIEGLKDIVVLAIHTGRIYSIVEAVRGTSAESTFDGKLDGTPSEYTTFSDYFNKKYGIVLEYPKQPLLRLKQSHNPHNLLVNFNDIGDETLKSDMVTRKPQTHVNMPPELLFRIDIPREVLKSSYLLPSLMHRLESLMLSSQLRKEIGGHASSFKISSHLILEALTTLRCCESFSMERLELLGDSVLKYAVSCHLYLKHFNKHEGQLSGLRQLAVCNANLHKLGTSRNLQGYIRDSPFDPRRWCAPGQRRTRHVPCKCELDTLEVPSNSKFQVEDPKLVLGICCDKGHRWMISKTIADCVESLIGAYYIDGGLIAALHVMKWFGIDAEHDPPLLFDAIATATLRPYIPKMDDIATLESKIGYQFVTKGLLLEAITHGTEEEQSLGYCYQRLEFLGDSVLDLLITRHLFHNHGEIDPGEMTDLRSASVSNENFAQVAVRHNFHPHLQHCSSLLLSQITEYVAHLAESHGGARTFHGTKVPKVLGDLVESIAGAILIDTKLNLDEVWRIYKPLLSPIETPDKLELPPLRQLHQLCDSLGYFVNEKCTRKGEFVRAELRLQLNDILLIGEGYERSRKVSKGQAASRLLDELKKRGISFSYGSKKRKIYEDVGDLPCQDTKNDISGQKTNGVSLELNGQENHRMTETQLSAQPTGVSCNGESSCSLPAVAINMKKGGPRNSLFNLCRSLDWPMPTFKSSEHRSRTPIEFDEGSEKRKVYNSFRSNVILHIPNSGSIECEGDAKADKKSSLDSAAVALLYKLHLQGKVIVGDP 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49260802 49268193 + Bda003591.1 Bda01g01354 1354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01354 1137 CDD RIBOc 529 701 IPR000999 GO:0004525|GO:0006396
Bda01g01354 1137 Pfam Ribonuclease III domain 546 681 IPR000999 GO:0004525|GO:0006396
Bda01g01354 1137 Pfam Ribonuclease III domain 758 866 IPR000999 GO:0004525|GO:0006396
Bda01g01354 1137 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 56 146 IPR005034 GO:0016891
Bda01g01354 1137 PANTHER DICER-RELATED 2 1131 - -
Bda01g01354 1137 SUPERFAMILY RNase III domain-like 720 885 IPR036389 GO:0004525|GO:0006396
Bda01g01354 1137 ProSiteProfiles PAZ domain profile. 372 484 IPR003100 GO:0005515
Bda01g01354 1137 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 2 1131 - -
Bda01g01354 1137 CDD RIBOc 738 888 IPR000999 GO:0004525|GO:0006396
Bda01g01354 1137 Gene3D Ribonuclease III domain 509 692 IPR036389 GO:0004525|GO:0006396
Bda01g01354 1137 Gene3D Ribonuclease III domain 715 886 IPR036389 GO:0004525|GO:0006396
Bda01g01354 1137 ProSitePatterns Ribonuclease III family signature. 758 766 IPR000999 GO:0004525|GO:0006396
Bda01g01354 1137 Gene3D Dicer dimerisation domain 51 148 IPR038248 -
Bda01g01354 1137 ProSiteProfiles Ribonuclease III family domain profile. 509 681 IPR000999 GO:0004525|GO:0006396
Bda01g01354 1137 ProSiteProfiles Ribonuclease III family domain profile. 722 867 IPR000999 GO:0004525|GO:0006396
Bda01g01354 1137 SUPERFAMILY RNase III domain-like 507 705 IPR036389 GO:0004525|GO:0006396
Bda01g01354 1137 SMART riboneu5 528 701 IPR000999 GO:0004525|GO:0006396
Bda01g01354 1137 SMART riboneu5 737 890 IPR000999 GO:0004525|GO:0006396
Bda01g01354 1137 Pfam PAZ domain 372 505 IPR003100 GO:0005515
Bda01g01354 1137 SMART PAZ_2_a_3 356 508 IPR003100 GO:0005515
Bda01g01354 1137 Gene3D - 1049 1127 - -
Bda01g01354 1137 Pfam Dicer dimerisation domain 56 140 - -
Bda01g01354 1137 SUPERFAMILY PAZ domain 371 480 IPR036085 GO:0005515
Bda01g01354 1137 Gene3D paz domain 360 481 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01354 K11592 DICER1, DCR1; endoribonuclease Dicer [EC:3.1.26.-] - jre:108996299 1404.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01354 Bda-Chr1:49260802 Bda02g00329 Bda-Chr2:43463425 8.12E-129 dispersed
Bda01g01354 Bda-Chr1:49260802 Bda15g00962 Bda-Chr15:17741445 1.31E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006008 1 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01354 Bda_Chr01 FPKM 0.0 0.18058 0.0 0.0 0.0 0.0 0.0 0.0 0.0