Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01356 ATGGAATCGGAGGATGCAGTGACGAGTAAATTGGAGGAATTGCAGAAAGATTTGGGCAGGAAGCTGAAATTAGAAGATGCAATCGCTTCCCTCTTGTCTCTGTTTCGAGATCGATATCCATCTGCCTCTCCATCTCTCCGAAAATCGGTGTGTTTTCTATTTGTTATATTCTCTTTGATATTGCTCTACATAACATTATATATGGTTTGTTACAATTGCCTGTGGTCGCGGCAGTTATATTCTGCTGTATGCCGAGCTGCAACTGTTCTGAAAACGAGGTATACATCCCCTGGTTTTTGGATCGCGGGGCTAGGGCTTTTTGAGGTGGCGCATTCTATGGTTTCTGATTCTTCTGAGAAGCAGCATTTGAAGAATTGTGTTGCCCATGCTAAGGAAATTTTGAATCAAGTAGAAAACCCCTCTCAATCGCATGAAAATACGCCGCCGAATAGAGGATATCTTTTTGAAGGACACCTGACTGTGGATCCAGAGCCCCCTCAGCCTCAGTGGTTGGTGCAATCAAATCTATTGACTACTGCGGCTACGCTTTTTGAAGCTGAATCTTCTCGAGTTCCATCTGAAAACAATGAGCTATCTGAAACAACTGCCAATGTTATTCAAGCACTCATTGACAACTTAGATAATATATTGGAGAACGATCATATGGCCCCAAGAGCTCCCCCTGCGAGTAAAGAAGTAGTTGCAAACCTTCCTGTCATTACCGTTACAGATGAAATCCTTTCCAAGCTAGGAAAAGATGCAGAGTGTGCTATTTGTAAAGATGATTTAGCTGTTAATGACAAGATGCAAGAGTTGCCTTGCAAGCATACATTTCATCCTCCATGTCTAAAGCCATGGCTGGATGAGCATAATTCTTGTCCAATCTGTCGTCATGAGTTGCTAACTGATGATCATGCCTATGAGAGCTGGAAGGAACGGGAAAAGGAGGCAGAAGAAGAGAGGAAAGGAGCTGCGAATGCCATTAGAGGTGGTGAATACATGTATGTTTAG 1011 43.03 MESEDAVTSKLEELQKDLGRKLKLEDAIASLLSLFRDRYPSASPSLRKSVCFLFVIFSLILLYITLYMVCYNCLWSRQLYSAVCRAATVLKTRYTSPGFWIAGLGLFEVAHSMVSDSSEKQHLKNCVAHAKEILNQVENPSQSHENTPPNRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFEAESSRVPSENNELSETTANVIQALIDNLDNILENDHMAPRAPPASKEVVANLPVITVTDEILSKLGKDAECAICKDDLAVNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELLTDDHAYESWKEREKEAEEERKGAANAIRGGEYMYV 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49296315 49299382 - Bda003593.2 Bda01g01356 1356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01356 336 PANTHER ABI3-INTERACTING PROTEIN 2-1 78 330 - -
Bda01g01356 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 78 330 - -
Bda01g01356 336 SMART ring_2 256 296 IPR001841 -
Bda01g01356 336 Pfam Ring finger domain 255 297 IPR001841 -
Bda01g01356 336 Coils Coil 307 327 - -
Bda01g01356 336 SUPERFAMILY RING/U-box 250 303 - -
Bda01g01356 336 ProSiteProfiles Zinc finger RING-type profile. 256 297 IPR001841 -
Bda01g01356 336 PANTHER ABI3-INTERACTING PROTEIN 2-1 4 50 - -
Bda01g01356 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 302 IPR013083 -
Bda01g01356 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 50 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01356 Bda-Chr1:49296315 Bda06g00845 Bda-Chr6:11724372 7.50E-25 dispersed
Bda01g01356 Bda-Chr1:49296315 Bda02g00580 Bda-Chr2:46671597 2.18E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01356 K16274 - zju:107420142 421.394