Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01357 ATGAATTCTTTTGTTTGCTGGGCGGTTCTGGTCGTTTTTCTTTCTGGGTTTTCGTCGGGAGAGTCGGAGAACACGACAACGCCGGTGAATGTGGGGTTGGTTCTTGATTTAGATGGAGAAGTTGGGAGGATGGCACTGAGCTGTATAGACATTGCTCTCTCCGACTTCTATTCCTCCCACGGAGGTTTCAAGACCAGGCAAGCGCTTAATACCAGAGACTCCATGAAAGACGTTGTCGGAGCCGCTGCTGCAGGCCTAGATCTTCTGAAGAATGCGAAGGTGGAAGCTATAATCGGACCAGTGAGTTCAATGCAGGCTAACTTCTTGATTGAACTCGGAGATAAAGCTCAGGTTCCTATTATTTCATTTTCATCCACGAGCTCTTTGCTAACATCTCTTGGGAGTTCGTATTTTTTCCGGATAGCTCAAAACGACTCGTCTCAAGTTCAACCCATTTGTTCAATTCTCAAAGCTTTTGGGTGGAGAGAGGTCGTGCCTATCTACGTAGATAATGCGTTTGGGCAGGGAATTATACCCTACTTGGCTGATGCATTACAGGACATAGACGCTCTCATGCCTTATAGAAGTGCCATTCCTTCGTCAGCCTCTGATGATCAAATTGCAGCAGAGCTGTACAAGCTGATGAGCATGCAAACTAGGGTTTTTGTTCTCCATCTCCTGCCTAGTCTGGCTTCAAGGATTTTTAAAATGGCGAAAGAGATTGGGATGATGAGCGAAGGCTATGTTTGGATCATGACCGATTCAATCACTAATCTTTTGACTCAAATAGACGAGTCGGTTTTTGATTCGATGCAAGGGGTGTTGGGCGTGAAGACTCACGTTCCAAGATCAACCCAGCTAGATGATTTCAAAGTGAGATGGAAAAGGAAGTTTCAACAAGATAATCCGACCAATCTCGATGCTCAACTAAATGTTTTTGGACTGTGGAGTTATGATGCGGCTTGGGCATTAGCCATGGCTGTTGAGGCAGCCCTTTCGACTTCAAACCTTGGCTATCAAAAATCCAATAGCTCAACAAATGGAACTGATCTGGACACTTTCGGGGTTTCTCTGAACGGCCCGAGAATTCGCAACGAGCTGTCCAATACGACATTTACAGGACTTAGCGGGAATTTTAGCCTTGTCGACGGCCAATTGCAGTCTACAACTTTTGAAATAGTGAATATAAATGGTCATCTAGGGAGACCCATTGGATATTGGACACCCGAAACTGGTCTCTCAAAAAGATTGGGTTCATCTTCTTCGGCTGGAGCAACTCTAGGGACAATCCTATGGCCAGGAGATTCTACTTCAATTCCAAAGGGATGGGAGATTCCAACAAATGGTAAGAAGCTGAGAGTAGGAGTTCCTTACAAGGACGGATTCAGCGAATTTGTGAAAATAACAAATGATTCCATCTCAAATGCTACAACCGTCACAGGCTACTGCATAGACATCTTCAAAGCAGTTCTTGAGGAGTTACCTTACGCAATTGTTCCAGACTTTATCCCGTTTAACCCCCCTAATTATACATACGATGATCTAATCAACCAAGTCAAACTCGGGAACTTCGACGCAGTAGTGGGGGATGTGACGATCATTTGGCGTAGATCTCTGGACGTAGATTTTACGTTGCCATACACAGAATCAGAGGTGATAATGGTGGTACCCATGACAGACAGTTCGAAGAAGAATGCATGGGTGTTCTTGCGGCCTCTGTCGTGGGATCTTTGGGTGACAAGTGGTTGCTTCTTCGTCTTCATCGGCTTCGTCGTTTGGGTTTTAGAGCACAGAATAAATGAAGATTTCAGAGGGCCCTGGACTCATCAGCTGGGCACCAGTCTCTGGTTCTCCTTCTCCACCATGGTGTTTGCTCAGAGGGAGAGAGTGGTTAGCAATTTCGCTAGATTCGTGGTGGTAATATGGTTCTTCGTCGTGCTTATACTGACCCAGAGTTACACTGCCAGTTTAACCTCGCTTCTCGTCCAACAGCAACAACCTACAGTAACAGATGTGGATCAACTTTTGAAGAGCAAGGAAAGAGTCGGCTACCAAGATGGTTCTTTTGTCCAGGGAATTCTGATATCCTTAAAATTTGACCCTGGCAAGCTTGTAAGCTATAGTAGTCCAGAAGAATTAGATGAACTACTCTCCAAAGGAAGCGCCAATGACGGCATTGCAGCAGCATTTGACGAAATTCCCTACATGAAGCTTTTTCTTTCCAAATACTGCTCAAAATATACCACTGGTAATCCTTCTTATAAAGCAGACGGGTTCGGATTTGCATTTCCTTTAGGCTCCCCACTTGTAGCTGATATATCAAGGGGGATATTGAACGTAACAGAGGGAGACCAGATGAACCAGATCGAAAAGAAATGGTTAGGCCAACAGACCTCCTGCTCAGCTTCCAGTCCCAATGTTACTTCAACGAGCCTCAATCTCAGTAGTTTTTGGGGCCTTTTTCTCATGGCTGGAACAGCTTCAGCCTTAGCCTTAATTTCATGCTCCATAAGCTTTCTTTACAGGCAAAGGCATCTTCTCCTCCAAAAGGACTCAAATACGTCCATCTGGAACAGAATCAAAACAGTATTAAGAGTATACAACCAGAGAGATCTCACCTCTCATACTTTCAAAAATAGGGATATAAACGAACGAAGGGGGATTAGCACCGGGAATGGAGGACAAGGTTTTGAGGGGGCCTCACCAGAATCACATTTCATCGACAGTCCGTCAGACTATTCAATCAATACGGAGGGGACTGCTCAGTTCTTCGTAGAGCAAGAAAGATTTTCATATGAGGCCGGCGAACCGAGCCACAGCGCCGGAGCTTCCCCGAATATAATGCCGGCGATTGAGCTGTCTACTAGAAATCCAGACATTATCGCAAGATAA 2892 45.19 MNSFVCWAVLVVFLSGFSSGESENTTTPVNVGLVLDLDGEVGRMALSCIDIALSDFYSSHGGFKTRQALNTRDSMKDVVGAAAAGLDLLKNAKVEAIIGPVSSMQANFLIELGDKAQVPIISFSSTSSLLTSLGSSYFFRIAQNDSSQVQPICSILKAFGWREVVPIYVDNAFGQGIIPYLADALQDIDALMPYRSAIPSSASDDQIAAELYKLMSMQTRVFVLHLLPSLASRIFKMAKEIGMMSEGYVWIMTDSITNLLTQIDESVFDSMQGVLGVKTHVPRSTQLDDFKVRWKRKFQQDNPTNLDAQLNVFGLWSYDAAWALAMAVEAALSTSNLGYQKSNSSTNGTDLDTFGVSLNGPRIRNELSNTTFTGLSGNFSLVDGQLQSTTFEIVNINGHLGRPIGYWTPETGLSKRLGSSSSAGATLGTILWPGDSTSIPKGWEIPTNGKKLRVGVPYKDGFSEFVKITNDSISNATTVTGYCIDIFKAVLEELPYAIVPDFIPFNPPNYTYDDLINQVKLGNFDAVVGDVTIIWRRSLDVDFTLPYTESEVIMVVPMTDSSKKNAWVFLRPLSWDLWVTSGCFFVFIGFVVWVLEHRINEDFRGPWTHQLGTSLWFSFSTMVFAQRERVVSNFARFVVVIWFFVVLILTQSYTASLTSLLVQQQQPTVTDVDQLLKSKERVGYQDGSFVQGILISLKFDPGKLVSYSSPEELDELLSKGSANDGIAAAFDEIPYMKLFLSKYCSKYTTGNPSYKADGFGFAFPLGSPLVADISRGILNVTEGDQMNQIEKKWLGQQTSCSASSPNVTSTSLNLSSFWGLFLMAGTASALALISCSISFLYRQRHLLLQKDSNTSIWNRIKTVLRVYNQRDLTSHTFKNRDINERRGISTGNGGQGFEGASPESHFIDSPSDYSINTEGTAQFFVEQERFSYEAGEPSHSAGASPNIMPAIELSTRNPDIIAR 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49303673 49307804 + Bda003594.1 Bda01g01357 1357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01357 963 Gene3D - 146 308 - -
Bda01g01357 963 PANTHER GLUTAMATE RECEPTOR 2.9 28 884 - -
Bda01g01357 963 Gene3D - 451 565 - -
Bda01g01357 963 CDD PBP1_GABAb_receptor_plant 30 417 IPR044440 -
Bda01g01357 963 CDD GluR_Plant 450 794 - -
Bda01g01357 963 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 28 884 - -
Bda01g01357 963 MobiDBLite consensus disorder prediction 884 903 - -
Bda01g01357 963 Gene3D - 351 450 - -
Bda01g01357 963 Gene3D - 742 802 - -
Bda01g01357 963 SMART GluR_14 451 796 IPR001320 GO:0015276|GO:0016020
Bda01g01357 963 Pfam Receptor family ligand binding region 48 398 IPR001828 -
Bda01g01357 963 PIRSF IGluLR_plant 1 915 IPR017103 -
Bda01g01357 963 SUPERFAMILY Periplasmic binding protein-like II 425 796 - -
Bda01g01357 963 Pfam Bacterial extracellular solute-binding proteins, family 3 477 796 IPR001638 -
Bda01g01357 963 Pfam Ligand-gated ion channel 797 826 IPR001320 GO:0015276|GO:0016020
Bda01g01357 963 SUPERFAMILY Periplasmic binding protein-like I 27 444 IPR028082 -
Bda01g01357 963 Gene3D - 566 688 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01357 Bda-Chr1:49303673 Bda13g01579 Bda-Chr13:39292530 0 dispersed
Bda07g00261 Bda-Chr7:3499091 Bda01g01357 Bda-Chr1:49303673 1.30E-116 dispersed
Bda01g01357 Bda-Chr1:49303673 Bda01g01358 Bda-Chr1:49351516 0 tandem
Bda01g01339 Bda-Chr1:49068838 Bda01g01357 Bda-Chr1:49303673 0 transposed
Bda05g00582 Bda-Chr5:53807583 Bda01g01357 Bda-Chr1:49303673 4.43E-146 transposed
Bda08g01287 Bda-Chr8:52355478 Bda01g01357 Bda-Chr1:49303673 2.25E-79 transposed
Bda13g01477 Bda-Chr13:37671634 Bda01g01357 Bda-Chr1:49303673 0 transposed
Bda01g01357 Bda-Chr1:49303673 Bda13g01578 Bda-Chr13:39270395 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01357 K05387 - pop:18107523 1068.53