Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01360 ATGGCTGCTGACATGCTACGTTTGCCAAATAAATGCAAACCGCGATTGTACTACTACTTGAAGCCCATTGGCTACCTCGTGAGAAGTTTTTCTCTCTGGGCAATGAAAAAGGATCGGGATCTTGAATCCGCTTTATCTCGTAATCGGAGATGGATTGTCAATAATCAAATCAAGAATATGATCCTTCGCTGGCCTAGACCGGGAATGCCTGTGAAATTTATCCAAAAGAAGTTTAAGACACTTGATTGTCATGGTAAAGCTCTCAACTGGCTTAGAAAGTACCCTTGCTGCTTTGAAGTTTATCTCGACAGTGACGATTATTATTGCCGATTAACCAAGCGAATGATTGCTTTGGTTGAAGAGGAAGAATCTATCAAGGATATGCAAGAAACGAGTGTTGTTGAGAAATTGGCGAAGTTTCTAATGTTAAGCGCGAATCATAGACTGAATGTTGTGAAACTGAATGAGCTAAGGCGGAATTTGGGTTTTCCTGATGATTACTTAATTAGAATCATCCCTAAATATCAGGATTTGTTTCGAATTGTCAATTCCAATGGGAAAAAAAGTTCAATGGAGATTGAATTATTATCTTGGAATCCAGATCTAGCAGTTTCTGCTCTAGAATCCTCAGCTCGTAGACGAGGCATCGAGCCAAGTTTCTCGTGCTGTCTGCCTTCAACTTGGGTTAAATCTTGGGAAAAATTTCATGAATTCAATGCAACTCCGTACATTTCACCATACATGAACCCCAGAGGTTTGGTTGAAGGATCAAAGGAAATGGAGAAAAGGACAGTAGGATTGATTCACGAGCTCTTATCACTAACTCTATGGAAGAAAGCATCAATCATGAAGCTAAGTCATTTCAAGAGAGAGTTTGGTTTTCCAGCAAAACCAAACATGTTACTTCTTAAGCACCCAGGTTTATTTTATGTTTCAAATAAAAATCAGATCTACACAGTTCTTCTTAGGGAAAGGTATAACGGATCAGAACTGATTGACAAAGATCCGCTTGTAATTGTGAAGGAGAAATTTGGAGAATTGATGCAGGAGGGTCTTCATGAATATAACAGGAGGCACCATCTGATGAATCTAGAAACGAGGAAAAAGAAAGGTGTGCTTTTTGGTGGACCAGAAAAAGGCAGAGGCAGAGATTCTAAAATGGATGAGAGTAACGATCAACAAGACAAGGTCGGAAGTCTATTTGATGCAGAAGATAGAAAAAGATTTTACAGGAGCAACTTCAACTTAGTTTTTCTTCAAATTATTCAAGGGAGATGGAAACAAGACCAGTTACTTGATGCAAAAACCATGTCAGAGAAGGAGAGTCAGAGGCTTGTTCTGGCCTGGCGAGTTTGA 1356 39.45 MAADMLRLPNKCKPRLYYYLKPIGYLVRSFSLWAMKKDRDLESALSRNRRWIVNNQIKNMILRWPRPGMPVKFIQKKFKTLDCHGKALNWLRKYPCCFEVYLDSDDYYCRLTKRMIALVEEEESIKDMQETSVVEKLAKFLMLSANHRLNVVKLNELRRNLGFPDDYLIRIIPKYQDLFRIVNSNGKKSSMEIELLSWNPDLAVSALESSARRRGIEPSFSCCLPSTWVKSWEKFHEFNATPYISPYMNPRGLVEGSKEMEKRTVGLIHELLSLTLWKKASIMKLSHFKREFGFPAKPNMLLLKHPGLFYVSNKNQIYTVLLRERYNGSELIDKDPLVIVKEKFGELMQEGLHEYNRRHHLMNLETRKKKGVLFGGPEKGRGRDSKMDESNDQQDKVGSLFDAEDRKRFYRSNFNLVFLQIIQGRWKQDQLLDAKTMSEKESQRLVLAWRV 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49420112 49421740 + Bda032945 Bda01g01360 1360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01360 451 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 24 409 IPR045040 GO:0003723
Bda01g01360 451 MobiDBLite consensus disorder prediction 373 397 - -
Bda01g01360 451 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 24 409 - -
Bda01g01360 451 Pfam Plant organelle RNA recognition domain 36 351 IPR021099 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01360 - - - qsu:112023978 618.231
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01360 Bda-Chr1:49420112 Bda10g00595 Bda-Chr10:39964591 5.35E-55 dispersed
Bda01g01360 Bda-Chr1:49420112 Bda01g01362 Bda-Chr1:49464272 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g581 . . . . . . . . Cmo05g00352 Cmo12g00318 . Cma05g00348 . Car12g00348 Sed14g1268 Cpe07g00324 . Bhi04g00051 Tan02g2763 Cmetu04g0384 . . . . . . . . . . . . . . . . . . Cme03g01576 Blo17g00002 . Bda01g01360 . Bpe14g00601 . . Bma02g00007 . . . . Cma12g00365 . Car05g00294 Cpe11g00294 . . . . . . . . Cla08g01367 Cam08g1836 Cec08g1415 Cco08g1544 Clacu08g1531 . Cre08g1315 Lsi08g01250 . Chy03g01083 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005099 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01360 Bda_Chr01 FPKM 39.710854 45.936016 12.25398 13.991568 12.794361 12.755188 12.592689 14.608393 13.995702