Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01378 ATGCAACCAACACCTGCTGGTAGAAGCAGTGGCAGTGGTGGTGTCGGAGGCGGAAGGGAACCGAATCACGGGAGCGGACTTGCCCGATTTTGCTCAGCTCCGGCGACCTGGTTAGAAGCACTTTTGGACGAAGAAGAGGAAGACCTGTTAAAGCCTAATCAGTGCTTTACCCAACTCCTTTCTAACCACTTGGAAATACCCATTTCTCAAAAGTCGGTGACTTTTAGTTCATCGGCCGATCAGGGTTTGTTTCAGCTCGATTCGTCGGATGGATTTGTGAGGCAGAACAGTTCGCCGGCCGACTTCCTAGCCAACGGCGGAATCGGGTCTGATGGGTTCTTCCTCAACTCTGGAATTTCAGCTTCCAACGACTTCCCATCGCCGAATATGGAGGTATCTCCAAAGACGTCGAAGCGGGCTAGGGAAGCCGAAATCGGAAGCTTTCATCCAAAATTTGCTGCTCAGCTGAAAGAGGAGCAAAATGTTGAGGTGCTTGGCGGGATTTCAAGCTCCATTGACATGGAGATGGAAAAGCTTCTTGAGGATTCCGTACCTTGCCGAGTCCGTGCAAAGCGCGGTTGTGCTACTCACCCTCGGAGCATTGCAGAAAGGGTTCGAAGGACTCGCATCAGCGACAGGATAAGGAAGCTTCAGGAGCTGGTACCTAACATGGATAAGCAAACGAACACGGCGGATATGCTCGATGAGGCCGTAGAGTATGTCAAGTATCTTCAGAAGCAGATTCAGTTTTTAAACTTGTTCGAAATGTCAGACGGGAACCCTTTTCATCTTCTCGGACAGGAACTGTTGGAACATCAAAGCAGATGCAAATGCGTGGACAAAGAATAG 849 49.94 MQPTPAGRSSGSGGVGGGREPNHGSGLARFCSAPATWLEALLDEEEEDLLKPNQCFTQLLSNHLEIPISQKSVTFSSSADQGLFQLDSSDGFVRQNSSPADFLANGGIGSDGFFLNSGISASNDFPSPNMEVSPKTSKRAREAEIGSFHPKFAAQLKEEQNVEVLGGISSSIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVEYVKYLQKQIQFLNLFEMSDGNPFHLLGQELLEHQSRCKCVDKE 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49646025 49648611 - Bda003618.1 Bda01g01378 1378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01378 282 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 251 - -
Bda01g01378 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 253 IPR036638 GO:0046983
Bda01g01378 282 Pfam Helix-loop-helix DNA-binding domain 199 245 IPR011598 GO:0046983
Bda01g01378 282 MobiDBLite consensus disorder prediction 1 26 - -
Bda01g01378 282 SMART finulus 200 250 IPR011598 GO:0046983
Bda01g01378 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Bda01g01378 282 PANTHER TRANSCRIPTION FACTOR BHLH80 14 251 - -
Bda01g01378 282 Gene3D - 195 257 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01378 Bda-Chr1:49646025 Bda13g01549 Bda-Chr13:38701893 2.58E-128 dispersed
Bda01g01378 Bda-Chr1:49646025 Bda03g01606 Bda-Chr3:55356807 2.55E-37 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15442 PF00010 HLH 1.10E-10 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01378 - - tcc:18593029 294.278