Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda01g01380 | ATGACCAGAAAGAAGGTGACGCTTTCATTCATCTCCAATGATTCCTCAAGGAAAGCGACTTTCAAGAAGAGAAAGAAAGGTCTGATAAAGAAGCTGAATGAGCTGAGTACTCTCTGCGGAATCGAAGCCTGCGCTGTGATTTACAGTCCGTTCGAAACTCTGCCGGAGGCATGGCCGTCTCCGGGTGGAGTTCAACGAGTTCTGTCTAGGTTCAGAGAACTGCCGGAAATGGATCAGAGCAGGAAGATGGTGAATCTGGAGAGCTTCATCCGGCAAAGGATCGCGAAAGCCAACGAACAGCTGAAGAAGCTGATGAAGGAGAACAGAGAGAAGGAGATGACTCGGGTAATGTTTGACTGCCTCACCGGAAACTCTCTCCAGGGTTTAACGATGCTGGATCTGCGGGATTTAGGCTGGGTGGTTGATCAGCATTTGAACGATATTGGCCGGAGAGACGATTTCCTGACCAAACCCGTGGCTCAAAATGAAAGCCAAGTGCTGGCTGCATTGCCGCCGCCATTGATGGAAGCTGGGGAAGAAATAATGCAGGGATATGGAGGTCAGAATATGGAGACAATGGAAGGAATGCAGAGATCGCAGCCATGGAATCCGCAGACGATGAACTCCAGTCAAGATCAAGATCAAATGATGGGGTTTAACGTTGACGATATGATACTTCCATTTGAAGATGCAAACAACAGTTCCGTTTGGTCTCCATTGTCGCCATGA | 729 | 48.56 | MTRKKVTLSFISNDSSRKATFKKRKKGLIKKLNELSTLCGIEACAVIYSPFETLPEAWPSPGGVQRVLSRFRELPEMDQSRKMVNLESFIRQRIAKANEQLKKLMKENREKEMTRVMFDCLTGNSLQGLTMLDLRDLGWVVDQHLNDIGRRDDFLTKPVAQNESQVLAALPPPLMEAGEEIMQGYGGQNMETMEGMQRSQPWNPQTMNSSQDQDQMMGFNVDDMILPFEDANNSSVWSPLSP | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 49664109 | 49664926 | + | Bda003620.1 | Bda01g01380 | 1380 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda01g01380 | 242 | PANTHER | MADS BOX PROTEIN | 2 | 166 | - | - | |
Bda01g01380 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 50 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g01380 | 242 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g01380 | 242 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g01380 | 242 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g01380 | 242 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN | 2 | 166 | - | - | |
Bda01g01380 | 242 | SUPERFAMILY | SRF-like | 1 | 85 | IPR036879 | GO:0003677|GO:0046983 | |
Bda01g01380 | 242 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g01380 | 242 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Bda01g01380 | 242 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Bda01g01380 | 242 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677|GO:0046983 | |
Bda01g01380 | 242 | Coils | Coil | 87 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g01380 | Bda-Chr1:49664109 | Bda13g01554 | Bda-Chr13:38743510 | 6.22E-108 | dispersed | |
Bda01g01380 | Bda-Chr1:49664109 | Bda13g01546 | Bda-Chr13:38692167 | 1.70E-107 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15443 | PF00319 | SRF-TF | 4.90E-18 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda01g01380 | - | - | pvy:116137794 | 253.832 |