Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01380 ATGACCAGAAAGAAGGTGACGCTTTCATTCATCTCCAATGATTCCTCAAGGAAAGCGACTTTCAAGAAGAGAAAGAAAGGTCTGATAAAGAAGCTGAATGAGCTGAGTACTCTCTGCGGAATCGAAGCCTGCGCTGTGATTTACAGTCCGTTCGAAACTCTGCCGGAGGCATGGCCGTCTCCGGGTGGAGTTCAACGAGTTCTGTCTAGGTTCAGAGAACTGCCGGAAATGGATCAGAGCAGGAAGATGGTGAATCTGGAGAGCTTCATCCGGCAAAGGATCGCGAAAGCCAACGAACAGCTGAAGAAGCTGATGAAGGAGAACAGAGAGAAGGAGATGACTCGGGTAATGTTTGACTGCCTCACCGGAAACTCTCTCCAGGGTTTAACGATGCTGGATCTGCGGGATTTAGGCTGGGTGGTTGATCAGCATTTGAACGATATTGGCCGGAGAGACGATTTCCTGACCAAACCCGTGGCTCAAAATGAAAGCCAAGTGCTGGCTGCATTGCCGCCGCCATTGATGGAAGCTGGGGAAGAAATAATGCAGGGATATGGAGGTCAGAATATGGAGACAATGGAAGGAATGCAGAGATCGCAGCCATGGAATCCGCAGACGATGAACTCCAGTCAAGATCAAGATCAAATGATGGGGTTTAACGTTGACGATATGATACTTCCATTTGAAGATGCAAACAACAGTTCCGTTTGGTCTCCATTGTCGCCATGA 729 48.56 MTRKKVTLSFISNDSSRKATFKKRKKGLIKKLNELSTLCGIEACAVIYSPFETLPEAWPSPGGVQRVLSRFRELPEMDQSRKMVNLESFIRQRIAKANEQLKKLMKENREKEMTRVMFDCLTGNSLQGLTMLDLRDLGWVVDQHLNDIGRRDDFLTKPVAQNESQVLAALPPPLMEAGEEIMQGYGGQNMETMEGMQRSQPWNPQTMNSSQDQDQMMGFNVDDMILPFEDANNSSVWSPLSP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49664109 49664926 + Bda003620.1 Bda01g01380 1380

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01380 242 PANTHER MADS BOX PROTEIN 2 166 - -
Bda01g01380 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 166 - -
Bda01g01380 242 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Bda01g01380 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bda01g01380 242 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda01g01380 242 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 Coils Coil 87 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01380 - - - pvy:116137794 253.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01380 Bda-Chr1:49664109 Bda13g01554 Bda-Chr13:38743510 6.22E-108 dispersed
Bda01g01380 Bda-Chr1:49664109 Bda13g01546 Bda-Chr13:38692167 1.70E-107 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
Bda10g01066 . 4 352 Type I MADS-box Gene Family AT2G03060 51.4 1.1e-95 347.1
Bda07g01472 . 1 351 Type I MADS-box Gene Family AT2G03060 50.4 3.5e-89 325.5
Bda15g00471 . 1 178 Type I MADS-box Gene Family AT5G60440 55.4 1.9e-45 179.9
Bda10g00822 . 3 171 Type I MADS-box Gene Family AT5G48670 60.8 4.8e-55 211.8
Bda08g01106 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 1.1e-54 210.7
Bda01g01380 . 1 169 Type I MADS-box Gene Family AT5G48670 59.5 5.5e-51 198.4
Bda13g01554 . 1 174 Type I MADS-box Gene Family AT5G48670 58.5 1.2e-50 197.2
Bda13g01546 . 1 174 Type I MADS-box Gene Family AT5G48670 57.4 2.7e-50 196.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15443 PF00319 SRF-TF 4.90E-18 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01380 Bda_Chr01 FPKM 23.746342 28.272699 17.71986 18.779167 7.016207 4.708592 5.267144 44.989605 46.277767