Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01380 ATGACCAGAAAGAAGGTGACGCTTTCATTCATCTCCAATGATTCCTCAAGGAAAGCGACTTTCAAGAAGAGAAAGAAAGGTCTGATAAAGAAGCTGAATGAGCTGAGTACTCTCTGCGGAATCGAAGCCTGCGCTGTGATTTACAGTCCGTTCGAAACTCTGCCGGAGGCATGGCCGTCTCCGGGTGGAGTTCAACGAGTTCTGTCTAGGTTCAGAGAACTGCCGGAAATGGATCAGAGCAGGAAGATGGTGAATCTGGAGAGCTTCATCCGGCAAAGGATCGCGAAAGCCAACGAACAGCTGAAGAAGCTGATGAAGGAGAACAGAGAGAAGGAGATGACTCGGGTAATGTTTGACTGCCTCACCGGAAACTCTCTCCAGGGTTTAACGATGCTGGATCTGCGGGATTTAGGCTGGGTGGTTGATCAGCATTTGAACGATATTGGCCGGAGAGACGATTTCCTGACCAAACCCGTGGCTCAAAATGAAAGCCAAGTGCTGGCTGCATTGCCGCCGCCATTGATGGAAGCTGGGGAAGAAATAATGCAGGGATATGGAGGTCAGAATATGGAGACAATGGAAGGAATGCAGAGATCGCAGCCATGGAATCCGCAGACGATGAACTCCAGTCAAGATCAAGATCAAATGATGGGGTTTAACGTTGACGATATGATACTTCCATTTGAAGATGCAAACAACAGTTCCGTTTGGTCTCCATTGTCGCCATGA 729 48.56 MTRKKVTLSFISNDSSRKATFKKRKKGLIKKLNELSTLCGIEACAVIYSPFETLPEAWPSPGGVQRVLSRFRELPEMDQSRKMVNLESFIRQRIAKANEQLKKLMKENREKEMTRVMFDCLTGNSLQGLTMLDLRDLGWVVDQHLNDIGRRDDFLTKPVAQNESQVLAALPPPLMEAGEEIMQGYGGQNMETMEGMQRSQPWNPQTMNSSQDQDQMMGFNVDDMILPFEDANNSSVWSPLSP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49664109 49664926 + Bda003620.1 Bda01g01380 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01380 242 PANTHER MADS BOX PROTEIN 2 166 - -
Bda01g01380 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 166 - -
Bda01g01380 242 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Bda01g01380 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bda01g01380 242 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bda01g01380 242 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bda01g01380 242 Coils Coil 87 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01380 Bda-Chr1:49664109 Bda13g01554 Bda-Chr13:38743510 6.22E-108 dispersed
Bda01g01380 Bda-Chr1:49664109 Bda13g01546 Bda-Chr13:38692167 1.70E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15443 PF00319 SRF-TF 4.90E-18 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01380 - - pvy:116137794 253.832