Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01381 ATGTACCCATTATTAAAGCCACTTCATGCTACCTGCAGAACCTCTCTTAATCGTTGCTCTAATCTCATAGACGTCGCCTTATCTTTTGGATCTTTCTCTTTTGCCAGTTCCATCCATGCCCAGTTGATCAAAATTGGACTGAATGTCGATACTTTTTTGGGGAATCGCTGCCTTGAGATGTGTGTTCACTTTGGTGCAGTTGGTGATGCATGGAAAGTTTTCGAAGATATCAGGGAGAAGAATACCATATCTCGGAATATACTCTTGAAGGGTTTGTTGAGATATGACCATATCGAACGAGCAGGCATCCTGTTTGATGAAATGCCACAAAGAGATGTTGTTAGTTGGAACTCCATGATTTCTGGCCTGAAGTCGTGTGGGTTTAATGAATATGCAGTTTCCATTTTTATGGAAATGCAAATAGCTGGATTTAAGCCAAGTGGGTATACATACTCAATTTTGATCTCAATTGCTCGGTGTACTCGTCAAGGGAGGGAAATTCACGGCAGTATCATACGAACTGGTATGATTTTGTCACATATAGTTCTTGGAAATTCGTTGATTGATATGTATGGAGGGTTTGGTCTAATCGATTATGCATTTAACGTATTTTACACGATGAAGGATGTGGATATTATCACTTGGAACTCTTTGATTTTGAGTTGCCATAGATCAGGCCTCGAAGAGTTGGCACTAGAACAGTTCTGTTGGATGAGATATACGGAGCACTTGCCCGATCAGTTCACGTTCTCCACGGTGATTAGTGTTTGTTCTTGCTTGCAGAATTTGGAAATGGGTAAGCAAATCTTTGTCTTTTGCTTCAAACTAGGATGTTTTTGTAATAGCATTGTCTTGAGTGCTACTATTGACATGTTTTCCAAATGCAACAGCTTGGTCGATGCAGTGAAACTCTTTGATGAAGTAAATAAGCGGGATTTAGCCATTTGTAATTCGATGATTTCGAGCTATGCCCGACATGGTTTTGGCCATGATGGCTTACGGATTTTCGTAAGTGCCTTGAGGGACAACCTCCGGCCAAGTGAATTTACGCTTAGCAGTGTGTTGGGCTGTGTCTCAGTCTTCATGCCGACGGAATTGTGTATGCAAATTCATTCTTTTGTCATAAAATTGGGATTTGAGTACGACCCTATTGTTGCCAGTTCATTAGTTGATATCTATGCGAAAGTTGGACTGATCGAAAGCGCAATAGACTTATTCAAGAACATGGAAGTGAAAGACTTAATATCATGGAATACGTTTCTTGCGGGTTTGTCGACCAACGGTAGAGAATACGAGGTTGTTCAAATTTTCAAAGAAGCTGCCAGAAAAGGCCTACGAGTCGATAGTATAACTCTTGCTGTAGTTTTATTAGCCTGCAACTATGGTGGTTTTGTCGATGAAGGATTGACCATCTTCTCGGCCGTGGAAAAAGATTATGGAATCGTGCCTGTCGATAAGCATTACGCTTGCATAGTGAACTTATTGGGTCGAGCTGGTAAACTCGAAGAAGCCATGGATATCATCTCAAAAATGCCATATTTACAGAGTAGTACGATTTGGAGGTCTCTTCTCTGTGCTTGTACAGTTGATGGAGACTTGAAAATCATCGAAAGAGTTGCGGAGAGGGTAATGGAAATGGACCCTCGATCGGATCTTCCTCACGTTGTGTTGGCTCGAGCTTATCAGACGAGAGGGATGTGGGAAAGGATGATTCAGGCAATATATGCTGTCAGACATAAATCTTCGGAGAAATCGAGTGGCTGCAGTTGGGTTGGAATGAAAAACATTGTCTCGTCAATGGAACATTCTCATTCGCCCTTTTATGTGGTCGTCGCCTATGATGCAACTAGGGATCACACCGAGAATGATCTTAAACTCACTGTCGATGCGATTCGAATGGTTGGCGACATTCTTCGCAGAGGTGCCACTCTTCTTGTCCTTGGAGTTCTTCATAAAGTTCCCAACCCCAGTCTACTATCTTCCAGTGGAGAAAGTTGGCATTCGACTGCTCCACAGACTGTTCGAAGCCATAGCGGAGATGTATCCAAGCAGAGGGCATCAAAAGCGCCGATCCTTTGTTCTGCTTGTGGGACAATGAATGAGCTGTCCATCAAGGACTCCATGAAATTCAACTATACCGACATAAAGCTCGCCACTTCCAATTTTGCAAAGGAAAATTTATTAGGAGAGGGTGGATTTGGTCGTGTATTTAAGGGCGAGCTCAAAGACAGACAGCTCATTGCAGCTAAGGTTCGAAAAGAAGCAAGTTCTCAAGGATTTGCTCAATTTCAATCTGAGGTGCTCATCTTAAGTTTTGCTCGGCACAAGAACATCGTTATGTTGTTGGGTTATTGCTGCAAGGAAAACTTAAATATTCTGGTTTATGAGTATATATGCAACAAATCTCTCGATTGGCATTTATTTGAATCGACAGAATCTGTTCTTGAATTACAGCAGAGGCATGATATAGCTGTTGGAACTGCAAAAGGATTACGATTTCTTCACGAAGAGTGTCGTGGCGGACCTATAATACATTGCGACGTGAGACCGAGCAATATACTTCTCACGCACAACTTTCTTCTGGCACGATTCAGATATCTGGCTCCAGAATATGCGGAGAATGGTATTCTCTCTGTTCGGACAGATGTCTATGCATTTGGCATTGTGTTGTTGCAGCTAATATCGGGACGGAGAGTGGTCGATCCAAAAGGAGAAGACAAGCATTGTTCTTTACGGCAGTGGGCAGAGCCGTTGATTGAGAACCTAGAATTGCATGAATTGGTAGATCAACGGCTCGGAAAGACATACGGAACGTACCAATTATACCAAATGGCTAAAGCCGCGGCTTTATGTGTTCAGAGAAACCCGGACAACCGTCCTTCCATGGGAGAGGTAAGAATTTTTTTCTTATAA 2913 42.43 MYPLLKPLHATCRTSLNRCSNLIDVALSFGSFSFASSIHAQLIKIGLNVDTFLGNRCLEMCVHFGAVGDAWKVFEDIREKNTISRNILLKGLLRYDHIERAGILFDEMPQRDVVSWNSMISGLKSCGFNEYAVSIFMEMQIAGFKPSGYTYSILISIARCTRQGREIHGSIIRTGMILSHIVLGNSLIDMYGGFGLIDYAFNVFYTMKDVDIITWNSLILSCHRSGLEELALEQFCWMRYTEHLPDQFTFSTVISVCSCLQNLEMGKQIFVFCFKLGCFCNSIVLSATIDMFSKCNSLVDAVKLFDEVNKRDLAICNSMISSYARHGFGHDGLRIFVSALRDNLRPSEFTLSSVLGCVSVFMPTELCMQIHSFVIKLGFEYDPIVASSLVDIYAKVGLIESAIDLFKNMEVKDLISWNTFLAGLSTNGREYEVVQIFKEAARKGLRVDSITLAVVLLACNYGGFVDEGLTIFSAVEKDYGIVPVDKHYACIVNLLGRAGKLEEAMDIISKMPYLQSSTIWRSLLCACTVDGDLKIIERVAERVMEMDPRSDLPHVVLARAYQTRGMWERMIQAIYAVRHKSSEKSSGCSWVGMKNIVSSMEHSHSPFYVVVAYDATRDHTENDLKLTVDAIRMVGDILRRGATLLVLGVLHKVPNPSLLSSSGESWHSTAPQTVRSHSGDVSKQRASKAPILCSACGTMNELSIKDSMKFNYTDIKLATSNFAKENLLGEGGFGRVFKGELKDRQLIAAKVRKEASSQGFAQFQSEVLILSFARHKNIVMLLGYCCKENLNILVYEYICNKSLDWHLFESTESVLELQQRHDIAVGTAKGLRFLHEECRGGPIIHCDVRPSNILLTHNFLLARFRYLAPEYAENGILSVRTDVYAFGIVLLQLISGRRVVDPKGEDKHCSLRQWAEPLIENLELHELVDQRLGKTYGTYQLYQMAKAAALCVQRNPDNRPSMGEVRIFFL 970
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49666073 49674449 + Bda003621.1 Bda01g01381 1381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01381 970 Gene3D Phosphorylase Kinase; domain 1 687 797 - -
Bda01g01381 970 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Bda01g01381 970 SUPERFAMILY Protein kinase-like (PK-like) 707 967 IPR011009 -
Bda01g01381 970 Pfam PPR repeat 415 445 IPR002885 -
Bda01g01381 970 Pfam PPR repeat 488 511 IPR002885 -
Bda01g01381 970 Pfam PPR repeat 185 209 IPR002885 -
Bda01g01381 970 Pfam PPR repeat 387 412 IPR002885 -
Bda01g01381 970 Pfam PPR repeat 213 235 IPR002885 -
Bda01g01381 970 Pfam PPR repeat 316 338 IPR002885 -
Bda01g01381 970 Gene3D Tetratricopeptide repeat domain 162 265 IPR011990 GO:0005515
Bda01g01381 970 Gene3D Tetratricopeptide repeat domain 15 161 IPR011990 GO:0005515
Bda01g01381 970 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
Bda01g01381 970 Pfam PPR repeat family 111 156 IPR002885 -
Bda01g01381 970 ProSiteProfiles Protein kinase domain profile. 722 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01381 970 Gene3D Transferase(Phosphotransferase) domain 1 863 969 - -
Bda01g01381 970 Gene3D Tetratricopeptide repeat domain 363 461 IPR011990 GO:0005515
Bda01g01381 970 Gene3D Tetratricopeptide repeat domain 266 361 IPR011990 GO:0005515
Bda01g01381 970 Gene3D Tetratricopeptide repeat domain 462 584 IPR011990 GO:0005515
Bda01g01381 970 Gene3D Transferase(Phosphotransferase) domain 1 798 862 - -
Bda01g01381 970 PANTHER OS07G0578800 PROTEIN-RELATED 1 600 IPR045215 GO:0003723|GO:0009451
Bda01g01381 970 Pfam Protein tyrosine and serine/threonine kinase 725 858 IPR001245 GO:0004672|GO:0006468
Bda01g01381 970 Pfam Protein tyrosine and serine/threonine kinase 863 965 IPR001245 GO:0004672|GO:0006468
Bda01g01381 970 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Bda01g01381 970 MobiDBLite consensus disorder prediction 661 681 - -
Bda01g01381 970 ProSitePatterns Tyrosine protein kinases specific active-site signature. 843 855 IPR008266 GO:0004672|GO:0006468
Bda01g01381 970 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Bda01g01381 970 MobiDBLite consensus disorder prediction 661 680 - -
Bda01g01381 970 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Bda01g01381 970 PANTHER OS03G0435200 PROTEIN 1 600 - -
Bda01g01381 970 ProSitePatterns Protein kinases ATP-binding region signature. 728 750 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01381 - - - qsu:111984994 721.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01381 Bda-Chr1:49666073 Bda14g00732 Bda-Chr14:5540068 5.05E-16 dispersed
Bda01g01381 Bda-Chr1:49666073 Bda07g00675 Bda-Chr7:8038499 3.21E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1175 . . . . . . . . Cmo04g02526 . . . Car01g01585 . . . . . . . . . . . Cla08g00648 . . . . . . Cone4ag1445 Cone7ag1489 . . Lsi04g01809 . . Cme03g00434 . . . Bda01g01381 Bpe02g01594 . . . . . . . . . . Cpe01g02090 . . . . . . . . . . . . . . . . . Chy03g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011857 1 2 0 0 1 1 1 1 1 1 1 1 1 0 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69445 PF07714 PK_Tyr_Ser-Thr 5.50E-21 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01381 Bda_Chr01 FPKM 5.407568 5.9939 6.944551 7.749833 7.643433 8.263795 7.562654 4.835786 4.013384