Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01384 ATGGGTCGGATTTTGAGCTTGTGGGTTTGTGTTTTCTTGGCGGGATTTGGGGTTCAAACGAATGGGTTTGAATACCCAGTTGAAGATCTGATTGTGAGATTGCCTGGTCAGCCTGAGGTTGGGTTTAAGCAGTTTTCTGGGTACGTTGATGTTGATTTGGTAGCTGGGAGGAGTCTGTTTTACTATTTTGTTGAAGCAGATAAGAAAGCAGAAGAGAAACCACTCGCTCTTTGGCTCAATGGAGGTCCGGGCTGTTCTTCCATTGGCGGTGGCGCCTTCACAGAGTTTGGTCCATTTTATCCGACAGGCGATGGCCGAGGACTAAGAAAAAATTCCATGTCATGGAACAGAGCTGCGAATCTCCTCTTCGTTGAATCTCCCGCCGGAGTTGGATGGTCATACTCAAATACTACTTCGGATTACACTTGTGGCGATGCCTCCGCGGGTAAATCAAACAGAGCTCCTTTATTCAACCATTTCTTGGCTAAGGATATGCTTACATTCATGTCGAAATGGTACGACAAGTTTCCACCTTACAAAACCAGACCTCTACTTCTCACTGGAGAAAGCTATGCAGGCCATTACATACCGCAGTTGGCGATCGCTATTCTGGACTATAACGAGCAATATAAAAGTTTCAAGTTCAACCTTAAAGGAGTTGCTATTGGGAACCCATTGCTTAAACTGGATCGAGATGTTCCAGCCACGTACGAGTTCTTCTGGTCACACGGTATGATATCAGACGAAATCGGCCTCACAATCATGAACAAATGCGATTTCGATGACTACGTTTTTCCAAGTCCTCACAATGTGAGCGATGTATGCAACGATGCAATCTCGAAAGCAAATAAAATCGTGGGTGATTACATAAACAATTACGATGTTATAGTCGATGTTTGCTACCCGTCCATTGTTCAGCAAGAGCTGAGATTGAAGAAAATGGCTACAAAGATAAGCCTTGGAGTCGATGTTTGTATGACTTATGAAAGGCGTTTCTATTTCAACCTTCCCGAGGTTCAAGCGGCTCTTCATGCCAATCGTACCAAATTGCCTTATAGCTGGTCCATGTGCAGTAGGGTTCTAAATTACAGCGAAACAGACAGTAACATCAACATTCTTCCTCTGCTACAGAGGATAATTCAAAATCACATTCCGGTTTGGGTTTTCAGTGGAGATCAAGATTCCGTTGTGCCATTATTGGGTTCTCGAACGCTTGTCCGGGAACTTGCCCATGATCTTAAATTGACAATGACGGTCCCTTATGGAGCTTGGTTTCACAAAGGCCAGAAAATAAATTTGATTAGGATTGTTGAGAGTGTCGGAGAAGGAGTGACAGATTTGAAACCAGGCGATCATGTTCTTCCCGTCTTCACCGGAGAATGCTCTGAATGTGCTCACTGTAAGTCCTCAGAGAGCAACATGTGTGATTTGCTGAGAATTAACACAGACAGAGGAGTGATGATTAGCGATGGCAAATCAAGATTCTCCATTAATGGCCGACCAATTTACCATTTCGTCGGGACTTCCACTTTCAGCGAATACACTGTCGTTCATGTTGGATGCCTCGCCAAAATTAACCCGTCTGCGCCATTAGACAAAGTCTGTGTTCTTAGCTGTGGAATCTCCACTGGCTTTGGCGCCACAGTTAATGTTGCCAAGCCAACCAAAGGCTCAACCGTAGCCATCTTTGGCCTTGGGGCTGTAGGCCTTGCAGCTGCCGAAGGGGCGAGAGTTTCAGGGGCTTCTAGGATAATCGGAGTTGATTTGAACTCTAGCAGATTTGAAGAAGCTAAGAAATTTGGAGTGACTGAGTTTGTCAACCCAAAAGACCATAAAAGGCCAGTTCAAGAGGTTCTTGCCGAGATGACGAACGGAGGTGTCGATCGAAGCGTTGAGTGCACTGGGAATATAGACGCCATGATTTCAGCATTTGAATGCGTTCACGATGGGTGGGGTGTGGCTGTTCTTGTGGGGGTACCTCACAAAGATGCTGTTTTCAAAACACACCCCATGAACGTCCTGAATGAGAGGACTTTGAAGGGCACTTTCTTCGGAAACTACAAGCCTCGAACTGATCTTCCGTCCGTCGTTGAAAAGTACATGAACAAGGAGCTTGAGTTGGAGAAGTTCATAACGCATCAAGTTCCGTTTGGAGAGATCAACAAGGCCTTTGATTATATGCTCAAGGGGGAGGGTCTAAGGTGTATTATTCGAATGGAAGACTGA 2226 45.28 MGRILSLWVCVFLAGFGVQTNGFEYPVEDLIVRLPGQPEVGFKQFSGYVDVDLVAGRSLFYYFVEADKKAEEKPLALWLNGGPGCSSIGGGAFTEFGPFYPTGDGRGLRKNSMSWNRAANLLFVESPAGVGWSYSNTTSDYTCGDASAGKSNRAPLFNHFLAKDMLTFMSKWYDKFPPYKTRPLLLTGESYAGHYIPQLAIAILDYNEQYKSFKFNLKGVAIGNPLLKLDRDVPATYEFFWSHGMISDEIGLTIMNKCDFDDYVFPSPHNVSDVCNDAISKANKIVGDYINNYDVIVDVCYPSIVQQELRLKKMATKISLGVDVCMTYERRFYFNLPEVQAALHANRTKLPYSWSMCSRVLNYSETDSNINILPLLQRIIQNHIPVWVFSGDQDSVVPLLGSRTLVRELAHDLKLTMTVPYGAWFHKGQKINLIRIVESVGEGVTDLKPGDHVLPVFTGECSECAHCKSSESNMCDLLRINTDRGVMISDGKSRFSINGRPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCVLSCGISTGFGATVNVAKPTKGSTVAIFGLGAVGLAAAEGARVSGASRIIGVDLNSSRFEEAKKFGVTEFVNPKDHKRPVQEVLAEMTNGGVDRSVECTGNIDAMISAFECVHDGWGVAVLVGVPHKDAVFKTHPMNVLNERTLKGTFFGNYKPRTDLPSVVEKYMNKELELEKFITHQVPFGEINKAFDYMLKGEGLRCIIRMED 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49738048 49745721 - Bda003625.1 Bda01g01384 1384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01384 741 Gene3D - 544 682 - -
Bda01g01384 741 Pfam Alcohol dehydrogenase GroES-like domain 436 522 IPR013154 -
Bda01g01384 741 PANTHER CARBOXYPEPTIDASE 18 430 - -
Bda01g01384 741 SUPERFAMILY GroES-like 689 738 IPR011032 -
Bda01g01384 741 Gene3D - 325 361 - -
Bda01g01384 741 Pfam Serine carboxypeptidase 36 428 IPR001563 GO:0004185|GO:0006508
Bda01g01384 741 Gene3D - 436 731 - -
Bda01g01384 741 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Bda01g01384 741 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Bda01g01384 741 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 197 IPR001563 GO:0004185|GO:0006508
Bda01g01384 741 CDD alcohol_DH_plants 436 738 - -
Bda01g01384 741 SUPERFAMILY alpha/beta-Hydrolases 29 429 IPR029058 -
Bda01g01384 741 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 18 430 IPR001563 GO:0004185|GO:0006508
Bda01g01384 741 Gene3D alpha/beta hydrolase 27 301 IPR029058 -
Bda01g01384 741 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 530 703 IPR036291 -
Bda01g01384 741 Pfam Zinc-binding dehydrogenase 567 692 IPR013149 -
Bda01g01384 741 ProSitePatterns Serine carboxypeptidases, serine active site. 186 193 IPR018202 GO:0004185
Bda01g01384 741 SUPERFAMILY GroES-like 436 546 IPR011032 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01384 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - jre:109021509 692.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00693 Bda-Chr1:34098353 Bda01g01384 Bda-Chr1:49738048 5.26E-128 dispersed
Bda01g01384 Bda-Chr1:49738048 Bda05g00876 Bda-Chr5:57199328 2.23E-119 dispersed
Bda13g01718 Bda-Chr13:40495599 Bda01g01384 Bda-Chr1:49738048 1.28E-48 dispersed
Bda14g00341 Bda-Chr14:2458162 Bda01g01384 Bda-Chr1:49738048 1.04E-86 dispersed
Bda01g01384 Bda-Chr1:49738048 Bda13g01537 Bda-Chr13:38607656 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g815 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00575 . . . . Bda01g01384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01384 Bda_Chr01 FPKM 15.133517 14.26586 77.235115 86.284897 11.723082 14.269784 17.224136 11.46183 11.340842