Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01392 ATGGATTTGATTGAAGGAGTCGGAGAGAGCTCGTCGCCGCCTAGGAGCTTCGGAGGTTTCTCGAACCACGATGTGCGGCTCGACGTGTATAACCGCCTAGTGGAGAGTAGACACGAGGACGCTGTGTGCAATCCCGAGTTTCGCGAGCAGCTGGACGCTCACTTCCATCGCTTACCTCCTAGTTATGGATTAGATGTCAATATGGATAGAGTGGAAGATGTTTTGTTACATCAAAAGCTGCTTGCTTTAGCAAAGGATCCAAAGAATCGGCCAGTTTATCATATTCGTTTTCTAGAGCACGTAAGTTGTAGATTAGATAGCGATGGTGATCAAGAAATTTCAAGTAATATTTCTATTTCTGGGTCCTTTGGGGAAGCAGCTGATGAAAGAGTTCCGCCACCACACAAGAGAGAATTATACAATAAATTTGAGCCATGTTTCAGGCTTGAAGACTTGAATTTGGATGTTAAAAAGAAGGGGGAGGACACGAGTGACAGATATCTTCCTAAGAAGCAAGAAAACTCATATGTTTTTATTCACGAAATTATATTTTCTACTGTCGACAAACCAAAGCTTCTAAGCCAGCTTTCTTCGTTGCTTTCTGATATAGAACTTAACATTCGTGAAGCACATGTATTCTCGACAAATGATGGCTATTCCTTGGACGTTTTTGTGGTAGATGGATGGCCTATTGAGGATACAGATGGTTTATATGACGCCATGCAAAAAGCAATTGCTAGAAGCGAGGGTTCATGGTCTGGTTCGTCTAGTTGTCATTCATACTTGGAGAAATCACTGGCATCCCTACCAAAATCTGGGGGTTGGGAAATAGACAGAAGATTATTAAAGATTGGTGAACGAATTGCATCTGGATCTTGTGGAGACTTGCATCGAGGAGTATACCTTGGTCAAGATGTAGCTGTTAAAATTCTTAGATCTGAGCATTTAAATGATGCTCTGGAAGATGAATTTGCTCAAGAAGTGGCAATTCTGAGAGAGGTCCGGCATAAAAATGTTGTTGGTTTCATCGGGGCATGTACAAAGTCTCCTCATTTGTGCATAGTAACAGAATATATGCCAGGAGGGAGCCTTTACGATTATTTGCATAAGAATCATAATGTCCTAAAGCTCTCTCAACTATTAAAATTTGCTATCGATGTCTGCCAAGGAATGGAGTACTTGCATCTAAACAACATTATTCATAGAGATTTAAAGACAGCAAATTTGCTAATGGACACTCAAAATATTGTTAAGGTTGCTGATTTTGGGGTTGCGCGATTCCAAAACCAAGAGGGAGTGATGACTGCTGAAACAGGAACTTATAGATGGATGGCCCCTGAGGTTATAAACCACCAGCCTTATGATCAGAAGGCAGATGTTTTCAGTTTTGCTATCGTAATGTGGGAACTAGTGACAGCAAAGATTCCTTATGATTCCATGACTCCTCTACAAGCTGCTCTTGGAGTGAGACAGGGATTACGTCCAGATCTTCCCAAAAATGCACACCCCAAACTGTTGGAACTAATGCAGAGATGTTGGGATGATGTTCCGAAAAATCGGCCTTCCTTCACCGAGATAAAAGCCGAACTTCAAAATATTCTCCAAATTCAGGTGGCTTTGATTTTTTTTTTTCCCTTTTTTTTTTAA 1647 41.17 MDLIEGVGESSSPPRSFGGFSNHDVRLDVYNRLVESRHEDAVCNPEFREQLDAHFHRLPPSYGLDVNMDRVEDVLLHQKLLALAKDPKNRPVYHIRFLEHVSCRLDSDGDQEISSNISISGSFGEAADERVPPPHKRELYNKFEPCFRLEDLNLDVKKKGEDTSDRYLPKKQENSYVFIHEIIFSTVDKPKLLSQLSSLLSDIELNIREAHVFSTNDGYSLDVFVVDGWPIEDTDGLYDAMQKAIARSEGSWSGSSSCHSYLEKSLASLPKSGGWEIDRRLLKIGERIASGSCGDLHRGVYLGQDVAVKILRSEHLNDALEDEFAQEVAILREVRHKNVVGFIGACTKSPHLCIVTEYMPGGSLYDYLHKNHNVLKLSQLLKFAIDVCQGMEYLHLNNIIHRDLKTANLLMDTQNIVKVADFGVARFQNQEGVMTAETGTYRWMAPEVINHQPYDQKADVFSFAIVMWELVTAKIPYDSMTPLQAALGVRQGLRPDLPKNAHPKLLELMQRCWDDVPKNRPSFTEIKAELQNILQIQVALIFFFPFFF 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49814324 49827568 - Bda003635.1 Bda01g01392 1392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01392 548 PRINTS Tyrosine kinase catalytic domain signature 458 480 IPR001245 GO:0004672|GO:0006468
Bda01g01392 548 PRINTS Tyrosine kinase catalytic domain signature 356 369 IPR001245 GO:0004672|GO:0006468
Bda01g01392 548 PRINTS Tyrosine kinase catalytic domain signature 393 411 IPR001245 GO:0004672|GO:0006468
Bda01g01392 548 PRINTS Tyrosine kinase catalytic domain signature 439 449 IPR001245 GO:0004672|GO:0006468
Bda01g01392 548 PRINTS Tyrosine kinase catalytic domain signature 501 523 IPR001245 GO:0004672|GO:0006468
Bda01g01392 548 SUPERFAMILY Protein kinase-like (PK-like) 268 541 IPR011009 -
Bda01g01392 548 Pfam Protein tyrosine and serine/threonine kinase 282 530 IPR001245 GO:0004672|GO:0006468
Bda01g01392 548 CDD STKc_MAP3K-like 288 530 - -
Bda01g01392 548 ProSiteProfiles ACT domain profile. 181 255 IPR002912 -
Bda01g01392 548 SMART serkin_6 282 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01392 548 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 536 - -
Bda01g01392 548 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 10 536 - -
Bda01g01392 548 SUPERFAMILY ACT-like 180 247 IPR045865 -
Bda01g01392 548 Gene3D Phosphorylase Kinase; domain 1 272 359 - -
Bda01g01392 548 ProSiteProfiles Protein kinase domain profile. 282 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01392 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Bda01g01392 548 Gene3D Transferase(Phosphotransferase) domain 1 360 541 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01392 Bda-Chr1:49814324 Bda06g00467 Bda-Chr6:6719315 0 dispersed
Bda01g01392 Bda-Chr1:49814324 Bda01g01431 Bda-Chr1:50235432 0 wgd
Bda01g01392 Bda-Chr1:49814324 Bda13g01522 Bda-Chr13:38266301 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69447 PF07714 PK_Tyr_Ser-Thr 1.30E-73 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01392 - - zju:107403422 840.876