Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01399 ATGGGGATGGATATGTACAAGCCATTTTACCAGATTACCACATGGAAAAATGGTTTCAATAGACATGGTAGCCCAAACAATGTAGAGGCGAATACTAGTCCAGATGAGAAGACTGAATCTGTTAAATGTCAATCAATGGAACATTTGGTTACCTGCCAAGAAGGAAACAACTCACATGAAAAGGTTCAGAGACGGTTGATCCAAAACCGTGAAGCTGCTCGTAAAAGTCGTCAAAGAAAAAAGGCGTATGTCCAACATTTAGAAACTAGCCGTTTGAAGCTAGCACAGTTGGAGCAAGAACTAGTGAGAGTCCAACAGCAGGGTCTATACACAGGCAATGTAATGGACTCAGGATTATGTGGAACAGTAAACCCAGTGATTGCTGCATTTGAAATGGAATATACAATGTGGGTTGGAGAGCAACAGAGACAGGACAGTGGACTTCGAAATGCATTGCAAGCTCAAGCAACTGATCTACAGCTTCAGACACTTGTAGACAGTGCCTTGAATCACTACAACGATCTTTTTCGCATGAAATCAGATGCTGCAAAAGGTGATGTTTTCTACTTGTTGTCTGGCTTGTGGAGAACACCAGCTGAACGGTTTTTCCTATGGCTTGGAGGATTCCGCCCATCTCAGCTTCTAAATGTTCTCATGCCACATTTTGGACCCTTAACGGATGAACAAGTATTGGATATTAGTAATTTGAGACAATCATCTCAAGAAGCTGAGTATGCTATCTCACAGGGAATGGATCAACTGCATCAAGCTATATTGCATAGCGTCTCAGCAGATGCCCTAAGTTCAGGAAGTTTTGCTTTCCAGATGGATGATCCAATGGAGAAGTTTGAAACGCTGGAGAATTTCGTCAGCCAGGCAGACCATCTTCGGCAACAGACCCTCCAGCGGGTGTCTCGCATCCTAATGACAGAGCAAGCAGCTCGAGGCCTGCTTGCCTTAGGAGAGTACTTTCATCGCCTCCGTGCTCTTAGTTCTCTTTGGACTGCTCGTCCTCGGGAACCCACTATGTAG 1032 44.48 MGMDMYKPFYQITTWKNGFNRHGSPNNVEANTSPDEKTESVKCQSMEHLVTCQEGNNSHEKVQRRLIQNREAARKSRQRKKAYVQHLETSRLKLAQLEQELVRVQQQGLYTGNVMDSGLCGTVNPVIAAFEMEYTMWVGEQQRQDSGLRNALQAQATDLQLQTLVDSALNHYNDLFRMKSDAAKGDVFYLLSGLWRTPAERFFLWLGGFRPSQLLNVLMPHFGPLTDEQVLDISNLRQSSQEAEYAISQGMDQLHQAILHSVSADALSSGSFAFQMDDPMEKFETLENFVSQADHLRQQTLQRVSRILMTEQAARGLLALGEYFHRLRALSSLWTARPREPTM 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49898895 49901802 - Bda003640.2 Bda01g01399 1399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01399 343 Coils Coil 80 107 - -
Bda01g01399 343 Pfam Seed dormancy control 147 219 IPR025422 GO:0006351|GO:0043565
Bda01g01399 343 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 64 79 IPR004827 GO:0003700|GO:0006355
Bda01g01399 343 PANTHER TRANSCRIPTION FACTOR TGA7 4 341 - -
Bda01g01399 343 Pfam bZIP transcription factor 61 94 IPR004827 GO:0003700|GO:0006355
Bda01g01399 343 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 59 101 IPR004827 GO:0003700|GO:0006355
Bda01g01399 343 PANTHER TRANSCRIPTION FACTOR TGA9 4 341 - -
Bda01g01399 343 SUPERFAMILY Leucine zipper domain 61 101 IPR046347 GO:0003700|GO:0006355
Bda01g01399 343 ProSiteProfiles DOG1 domain profile. 127 337 IPR025422 GO:0006351|GO:0043565
Bda01g01399 343 Gene3D - 60 110 - -
Bda01g01399 343 SMART brlzneu 57 120 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01399 Bda-Chr1:49898895 Bda14g01022 Bda-Chr14:8625613 3.65E-112 dispersed
Bda01g01399 Bda-Chr1:49898895 Bda13g01516 Bda-Chr13:38213440 3.28E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15445 PF14144 DOG1 4.90E-29 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01399 K14431 - vvi:100255706 400.979