Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01404 ATGGGTTCTCTTTCGACTGAGAGTTCGAATGTGGAGAAAGAAGGAAGCCATGTTGTTGGCGATGAAGGAACTGGTAGAGCCGAGAAGCTTCAATGGCTTCTGGATAGTCCAGAACCTCCCTCTATGTGGCATGAGTTCATTGGTTGTCTCAAAGAAGCTTTCGTTCCTCGTAGCAACAGACCTTCTTCTTCAGAGAAGCAGAAAGTATCTCTGCGTGTTTTTTCAGTCTTGCGAGGTGTTTTTCCGATTCTTAGTTGGGGAAGAAACTACAATGCTTCCAAGTTTCGGAGTGATCTAATGGCCGGTTTAACTCTAGCCAGCCTTAGCATTCCTCAGGTTCTCACTCTCTCTAACTCTTTCTCACTCTCTCTAACTCTTTCTTTCTCTCTCTATAATTATGATGTTTTGCAGAGTATTGGGTATGCTAATTTGGCAAAGCTTGATCCACAGTATGGTTTATACACAAGCGTCGTTCCGCCATTGATCTATTCATTACTGGGAAGTTCAAGAGAGCTAGCAATAGGACCAGTGGCTGTGGTTTCTTTGCTTTTATCCTCCATGCTTGGGAAAATTCAAGACCCTTTTGCAGACCCGATTGCCTACAGAAAACTCGTCTTCACCGTCACTTTCTTTGCTGGATCATTTCAAGCAGCGTTTGGATTATTTAGGTTGGGGTTTTTGGTGAATTTTCTTTCGCATGCTGCAATTGTTGGATTCATGGGAGGAGCCGCCATTGTTATAGGCCTTCAACAGCTCAAAGGTCTTCTGGGTATCACTCATTTTTCCAGCAGCACAGATATTATCTCTGTCTTGCACTCTGTTCTTCAATCTTTTCACCACTCATGGTACCCTCTGAATTTTGTTCTTGGCTGTTCATTCTTCATCTTCCTTCTACTGGCGAGATTCATTGGAAGAAGAAACAAAAAGCTGTTCTGGCTACCAGCAATTGCTCCATTATTATCAGTTATATTATCGACCCTAATCGTGTTTTTGACAAAAGCTGATAAACATGGAGTTAAAATTGTGAAACATATTGATAGAGGTGTAAATCGCAGCTCGGTTCATCAGCTACAACTTCACAGCCCTCACGTAGGGCAAGCTGCAAAAATTGGCCTGATTTCTGCCCTCATCGCTCTCACTGAAGCTATTGCAGTGGGAAGATCTTTTGCTTCCATCAATGGCTACCACCTTGATGGTAATAAGGAAATGGTGGCCATGGGGTTCATGAACATCGTAGGCTCTTTCACTTCTTGTTATGTTGCCACTGGTTCTTTTTCGAGGACTGCAGTGAATTTCAGCGCTGGATGTGAGACGGTGGTGTCGAACGTAGCAATTTCATTTGCGAAGATATTACTCAATTTTATTCGACCCGACATTGAACTGGTCGGAAAACTACCAACAAGTGATATCTTCTGTAACGTCCGGCAATACCCTATGGCTACAAAAACTCGAGGCATTATCATTATTCGAATTGACACTGGATTCCTTTGTTTTGCTAATGCTAATTTTATTAGAGATAAGGTTTTGAGATGGATTGAAGAAGAAGAAGAAAAAGAAAAAGACGGTGATGTTATTGCTAGCGTGATGAATGTGGATACTTCGGGAATTATCGCATTGGAGGAACTACATAGGAAGCTTATTTCCATTGGCGTAGAATTAAATATAGCAAACCCAAGATGGGAAGTGATTCACAAGCTGAGGATGGTTAAGTTCATAGACAGAATTGGAGGCAGAGTTTTTGGGTCTGTTGCTGAAGCTGTCCAAGCTTGTTCTCCGCCTAAATTGCCTACCTGA 1794 42.31 MGSLSTESSNVEKEGSHVVGDEGTGRAEKLQWLLDSPEPPSMWHEFIGCLKEAFVPRSNRPSSSEKQKVSLRVFSVLRGVFPILSWGRNYNASKFRSDLMAGLTLASLSIPQVLTLSNSFSLSLTLSFSLYNYDVLQSIGYANLAKLDPQYGLYTSVVPPLIYSLLGSSRELAIGPVAVVSLLLSSMLGKIQDPFADPIAYRKLVFTVTFFAGSFQAAFGLFRLGFLVNFLSHAAIVGFMGGAAIVIGLQQLKGLLGITHFSSSTDIISVLHSVLQSFHHSWYPLNFVLGCSFFIFLLLARFIGRRNKKLFWLPAIAPLLSVILSTLIVFLTKADKHGVKIVKHIDRGVNRSSVHQLQLHSPHVGQAAKIGLISALIALTEAIAVGRSFASINGYHLDGNKEMVAMGFMNIVGSFTSCYVATGSFSRTAVNFSAGCETVVSNVAISFAKILLNFIRPDIELVGKLPTSDIFCNVRQYPMATKTRGIIIIRIDTGFLCFANANFIRDKVLRWIEEEEEKEKDGDVIASVMNVDTSGIIALEELHRKLISIGVELNIANPRWEVIHKLRMVKFIDRIGGRVFGSVAEAVQACSPPKLPT 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49943944 49948484 - Bda003646.1 Bda01g01404 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01404 597 MobiDBLite consensus disorder prediction 1 24 - -
Bda01g01404 597 ProSitePatterns SLC26A transporters signature. 149 170 IPR018045 GO:0008271|GO:0008272
Bda01g01404 597 ProSiteProfiles STAS domain profile. 494 590 IPR002645 -
Bda01g01404 597 SUPERFAMILY SpoIIaa-like 482 590 IPR036513 -
Bda01g01404 597 PANTHER LOW AFFINITY SULFATE TRANSPORTER 3-LIKE 125 444 - -
Bda01g01404 597 PANTHER LOW AFFINITY SULFATE TRANSPORTER 3-LIKE 443 595 - -
Bda01g01404 597 PANTHER LOW AFFINITY SULFATE TRANSPORTER 3-LIKE 19 120 - -
Bda01g01404 597 Pfam STAS domain 477 586 IPR002645 -
Bda01g01404 597 Gene3D STAS domain 456 592 IPR036513 -
Bda01g01404 597 PANTHER SULFATE TRANSPORTER 125 444 IPR001902 GO:0015301|GO:0016020|GO:0055085
Bda01g01404 597 PANTHER SULFATE TRANSPORTER 443 595 IPR001902 GO:0015301|GO:0016020|GO:0055085
Bda01g01404 597 PANTHER SULFATE TRANSPORTER 19 120 IPR001902 GO:0015301|GO:0016020|GO:0055085
Bda01g01404 597 CDD STAS_SulP_like_sulfate_transporter 477 580 - -
Bda01g01404 597 Pfam Sulfate permease family 133 447 IPR011547 GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01404 Bda-Chr1:49943944 Bda03g00504 Bda-Chr3:4272633 1.24E-30 dispersed
Bda01g01404 Bda-Chr1:49943944 Bda03g00872 Bda-Chr3:7564021 2.14E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01404 K17469 - cit:102620800 628.246