Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01408 CTTTTCACTTCTAGCAATCGGAGCGGAGGGATGGATTTGAAGAGTGGGAGGGGCAGGCCGAGGTTGGATCGCCGTAATGCGGCCAAGCACATTGAGTACGATGCACTGGCTTCATCTTCTTTGTCTGACGATTCTTCTGGATCGCTGCATACACGTTCGCTTGAGCTTCCGGATAAAACGAGCTTCCGAATAGGGGGAAGTGATGGGGAATTTGATCGTATATGTCGGAGTTTGGGGCTTTCAGGGCCGGACGACTTTACTATTCCTGCGGCGGCGTATCAATCTACGAAGATCCGTTCCTCGTCTGATCGTCTACCCAATTCCAGGCTGCATAGGTTGGATAGCACTTGGGTGGAGGATGTGAAGGAGGAAGAAGACAGTGAAGCGGAAGCTGAAGCGGAAGCTGAGCTACTTGAGAGAGTAAGGGAATCGGTTAAAATTAGGGATTCGACTAAGTTACCTCGTTATGAAACAGCCGAGTTGAGTGGGAACGGGATCGTCACTGGTACTAGTGGAGGAGGAGGAGGTGCTGGTGGTGGAATTAAGGGTGTTCGTCCACCATTGATTAAGCCCCCGCCTTCTATGCGTCCTCCGGTTCATGATAATACTTCCTCAACTTGGGACATTTTCAGGGATTTTGCTCCTAATGATGAAGTAAGACCTTCAGTGGTGGTTCAAGAAGGAAACGATTCTCCTTCCGAAGATAATCACGAAGATGGAGATGAATCCGAAGCGGGGGTCGTGGAACGAGAAGAGGCTGGAGGCACAGGCAGACTTGACGATAGTCTTCGTGAACAGTCAAATTCACCTTCATTTTCAACTTCAAATGATGATGATTCTTCAAGCACAACCACAGAGCCTTATATATCTCCAAATGGTAGACTGAAGCGGACTATTTCGAACTGGGAAAAGGGTGAGCTTCTGGGGCGAGGATCATTTGGATCGGTGTACGAAGGAATTTCTGGTGATGGGTTTTTTTTCGCTGTCAAGGAAGTTTCACTGCTTGATCAAGACAATCAGGGACAACAAAGTATTATACAGCTTCAGCAGGTGAGACAGGCTCTTCATAACGAGATTGCTCTTTTAAGTCACTTTGAGCACGAGAATATAGTGCAATATTACGGCACCGAGAAGACTGAATCACACCTATTCATTTTTCTTGAGCTTGTGACAAAAGGATCCCTTATGAAGCTGTATCAGACGTATCATCTTATAGATTCCCAAGTTTCTGCATATACAAGACAAATTTTGCATGGTTTGAAATATCTTCACGATCAAAACGTGGTTCACAGGGATATTAAATGTGCGAATATATTAGTGGATGCCAGTGGAGCAGTAAAGCTTGCCGATTTTGGGTTGGCAAAGGCAACAAAAATGAATGATATTAAATCCTGTAAGGGAACAGCATTCTGGATGGCACCTGAGGTCGTTAATAGGAAGAACCAAGGATATGGTCACCCAGCTGATATTTGGAGCCTTGGTTGCACCGTACTGGAGATGTTAACAGGCAAACTTCCATACTCTGAGTTGGACAATCCAATGTCGGCATTGTTTAAAATTGGAAGTGGTAAGCCACCAGTTGTTCCAGATTGTCTATCAACAGATGCACGTGATTTTGTACTGCAGTGCTTACAGCCTCACCCACATGACCGTCCATCTGCTGCTCAACTCTTAGAGCATCCATTTGTGAAGAGATCGCTTCCTACTTCCTCAGGGCCTCAGTCGCCTTACTCATCTGGCAGAAGGAAATAA 1752 46.0 LFTSSNRSGGMDLKSGRGRPRLDRRNAAKHIEYDALASSSLSDDSSGSLHTRSLELPDKTSFRIGGSDGEFDRICRSLGLSGPDDFTIPAAAYQSTKIRSSSDRLPNSRLHRLDSTWVEDVKEEEDSEAEAEAEAELLERVRESVKIRDSTKLPRYETAELSGNGIVTGTSGGGGGAGGGIKGVRPPLIKPPPSMRPPVHDNTSSTWDIFRDFAPNDEVRPSVVVQEGNDSPSEDNHEDGDESEAGVVEREEAGGTGRLDDSLREQSNSPSFSTSNDDDSSSTTTEPYISPNGRLKRTISNWEKGELLGRGSFGSVYEGISGDGFFFAVKEVSLLDQDNQGQQSIIQLQQVRQALHNEIALLSHFEHENIVQYYGTEKTESHLFIFLELVTKGSLMKLYQTYHLIDSQVSAYTRQILHGLKYLHDQNVVHRDIKCANILVDASGAVKLADFGLAKATKMNDIKSCKGTAFWMAPEVVNRKNQGYGHPADIWSLGCTVLEMLTGKLPYSELDNPMSALFKIGSGKPPVVPDCLSTDARDFVLQCLQPHPHDRPSAAQLLEHPFVKRSLPTSSGPQSPYSSGRRK 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 49972122 49981065 + Bda003650.1 Bda01g01408 1408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01408 583 Coils Coil 121 148 - -
Bda01g01408 583 MobiDBLite consensus disorder prediction 38 55 - -
Bda01g01408 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Bda01g01408 583 MobiDBLite consensus disorder prediction 163 293 - -
Bda01g01408 583 Pfam Protein kinase domain 303 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01408 583 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Bda01g01408 583 MobiDBLite consensus disorder prediction 14 31 - -
Bda01g01408 583 SMART serkin_6 302 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01408 583 ProSiteProfiles Protein kinase domain profile. 302 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01408 583 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 178 573 - -
Bda01g01408 583 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 17 116 - -
Bda01g01408 583 MobiDBLite consensus disorder prediction 1 61 - -
Bda01g01408 583 Gene3D Transferase(Phosphotransferase) domain 1 299 577 - -
Bda01g01408 583 MobiDBLite consensus disorder prediction 261 293 - -
Bda01g01408 583 MobiDBLite consensus disorder prediction 243 259 - -
Bda01g01408 583 SUPERFAMILY Protein kinase-like (PK-like) 277 576 IPR011009 -
Bda01g01408 583 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 17 116 - -
Bda01g01408 583 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 178 573 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01408 K13414 MEKK1; mitogen-activated protein kinase kinase kinase 1 [EC:2.7.11.25] - rcu:8274146 647.891
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01408 Bda11g00746 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01408 Bda-Chr1:49972122 Bda07g01891 Bda-Chr7:36324652 2.75E-80 dispersed
Bda04g00602 Bda-Chr4:54654699 Bda01g01408 Bda-Chr1:49972122 1.99E-12 dispersed
Bda03g00522 Bda-Chr3:4368655 Bda01g01408 Bda-Chr1:49972122 3.75E-21 transposed
Bda15g00458 Bda-Chr15:7682873 Bda01g01408 Bda-Chr1:49972122 1.38E-146 transposed
Bda01g01408 Bda-Chr1:49972122 Bda11g00746 Bda-Chr11:7499350 0 wgd
Bda01g01408 Bda-Chr1:49972122 Bda03g00518 Bda-Chr3:4354665 5.63E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g328 . Blo12g00687 . . Bpe02g00081 . . Bma01g02638 Cmo04g02435 Cmo15g00733 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo17g00197 Blo18g00199 Bda11g00746 Bda01g01408 Bpe02g01619 Bpe14g00364 Bma01g00841 Bma02g00241 . . . . . Car04g02247 Car15g00659 Cpe01g02021 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002867 2 1 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 5 1 5 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69448 PF00069 Pkinase 6.10E-67 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01408 Bda_Chr01 FPKM 1.435884 1.259589 1.271618 0.842903 1.647582 1.304546 1.747003 0.326292 0.594162