Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01413 ATGGATTTCAACGGCATTGCTGTGGCTTTACGCCATTGCTGGAAAATGGGATCTTTAAAACGAGGAAATGCGCTTCACTGTCACTTGAAAAAAGTTGGGGGTTTGAATGACGTGTACCTTGGTAACAATTTGATTTCTATGTACCTGGACTTTTCTGATTTCAGAGGTGCGCAGAAAGCGTTTGATGAAATGCTCAAAAGAAACATCATTACCTGGACGACCATGGTTTCTGCTTATGCTAATGGTGGTCGACCATACGAATCTCTCCGATTGTATGATTCAATGGCTAGCTGGGAGATACCAAATGGGTTCATGTACTCAGCGGTTTTGAAAGCTTGCGCTATTGTTGCTGATATTGAGCGGGGTAAGCTGATTCACGAAAGAATTGTTAGAGAAAAACTGGTATCTGATACTGTTTTGATGAATTCCCTTTTGGATATGTACATCAAATGCGGAAGTTTGAGCGATGCACAAAAACTTTTTGATGAGATTCTTTGTGCAAACACAACGTCTTGGAACACCCTCATATTGGGCTATACAAAGTCTGGTTCGATGGAGGAGGCAATACATTTGATCCATTCTATGCCTGAACCAAATGCAGTGTCTTGGAATACTATTATTGCTGGTTTTGCTGATTGTGGGAGTGTACGTGCTCTGGAGTTTGTTTCTATGATGCACAGAAAAGGATTTAAGCTCGATGATTTTACTTTTCCTTCTGCTTTAAAAGCCTGTGCATTTCATGGCTTTTCAGATTTTGGCAAACAGATTCATTCCTACGTCATTAAGTTGGGCTTAGAATGTAGCTATTTTACTTTATCTGCCATGATAGATATGTATTCGAATTGCAATTTGATGGTTGAGGCTGTGAAGTTGTTTGATGAAAACTCAAGCCCTGATGCTTCAATGGGTAGCTTGGCAATATGGAATTCATTGCTTTCTGGATACATTGTTAATAATCATAATAGGGCATCATTTTCCCTGATATCAGAAATTTATTACTCAGGCGCACATTGGGACACATACACTTTCAGTGGTGCTTTAAAGGCATGCATAAATTTTCAAAACTCGAGGGTTGGGCTTCAAGTGCATGGTCTGGTTGTCACCTATGGATATGAATTAGATTATGTTGTTGGAAGCATTGTTGTAGATCTTTATGCAAAATTGGGAAGCATAGAGAATGCATTCAAATTATTTGAAAAACTTCCAAAGAAAGATGCAATTGCTTGGTCTGGCTTAATCATGGGTTGTGCACATAGGGGATTAAACTGGTTGGCTTTCTCAATATTCAGAGATATGATCAATTTTGTTATTGAAATAGATCATTTTGTGGTTGCTTCTGTTCTTAAAACATGTTCGACTATAGCATCGCCTAGAAGTGGAAAGCAGGTCCATGCTTTTTGTGTGAAGAAGGGATTTGGAACGGAAGGAGTTCTAATTACATCTCTTACTGATATGTACACAAAATGTGGTGAAATTCAAGATGGATTGATTTTGTTTAATTGTATGCCGGAAAAGGACGTGGTGAGTTGGACTGGGATCATTGTGGGGTGCGGTCGAAATGGGAAGCCAGAGCAGGCAATCAGATTATTTCATGAGATGATCGAATCCGGGTCAAAACCGAATGAAGTTACCTTTTTAGGTGTTCTTTCTGCTTGTAGATATGCTGGACTGGTTGACGAGGCTAAGTCCATATTTAATTCCATGAAGATAGAATACAAACTTGAGCCTTATTTAGAGCATTATTGTTGTATGGTTGATCTTCTTGGTCAAGCTGGACATTTTGATGAGGCTCAGGATCTAATAGCTAATATGCCATTTGAGCCGGATCACAATACCTGGCGTACCTTGTTAGGAGCCTGTGGAGCTCACCAAAACGCTGAGCTTGTTCATGTTATTGCTGATCACCTTCTTGAGACTTTATCTGAAGATCAATCAGTATATGTGACGCTTTCCAATGCTTATGCAACATTAGGGAAGTGGTATGGAATAAGCAAAGCGAGGGAAGCTGCCAAGAATGTGGGTGTGAAATATGCTGGAATGAGCTGGATTGAAATTTCAAGTTAA 2064 39.63 MDFNGIAVALRHCWKMGSLKRGNALHCHLKKVGGLNDVYLGNNLISMYLDFSDFRGAQKAFDEMLKRNIITWTTMVSAYANGGRPYESLRLYDSMASWEIPNGFMYSAVLKACAIVADIERGKLIHERIVREKLVSDTVLMNSLLDMYIKCGSLSDAQKLFDEILCANTTSWNTLILGYTKSGSMEEAIHLIHSMPEPNAVSWNTIIAGFADCGSVRALEFVSMMHRKGFKLDDFTFPSALKACAFHGFSDFGKQIHSYVIKLGLECSYFTLSAMIDMYSNCNLMVEAVKLFDENSSPDASMGSLAIWNSLLSGYIVNNHNRASFSLISEIYYSGAHWDTYTFSGALKACINFQNSRVGLQVHGLVVTYGYELDYVVGSIVVDLYAKLGSIENAFKLFEKLPKKDAIAWSGLIMGCAHRGLNWLAFSIFRDMINFVIEIDHFVVASVLKTCSTIASPRSGKQVHAFCVKKGFGTEGVLITSLTDMYTKCGEIQDGLILFNCMPEKDVVSWTGIIVGCGRNGKPEQAIRLFHEMIESGSKPNEVTFLGVLSACRYAGLVDEAKSIFNSMKIEYKLEPYLEHYCCMVDLLGQAGHFDEAQDLIANMPFEPDHNTWRTLLGACGAHQNAELVHVIADHLLETLSEDQSVYVTLSNAYATLGKWYGISKAREAAKNVGVKYAGMSWIEISS 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50044079 50046142 - Bda003657.1 Bda01g01413 1413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01413 687 Pfam PPR repeat 140 165 IPR002885 -
Bda01g01413 687 Pfam PPR repeat 171 196 IPR002885 -
Bda01g01413 687 Pfam PPR repeat 380 404 IPR002885 -
Bda01g01413 687 Pfam PPR repeat 70 97 IPR002885 -
Bda01g01413 687 Pfam PPR repeat 271 294 IPR002885 -
Bda01g01413 687 Pfam PPR repeat 408 434 IPR002885 -
Bda01g01413 687 Pfam PPR repeat 580 604 IPR002885 -
Bda01g01413 687 Pfam PPR repeat 42 69 IPR002885 -
Bda01g01413 687 Gene3D Tetratricopeptide repeat domain 256 357 IPR011990 GO:0005515
Bda01g01413 687 Gene3D Tetratricopeptide repeat domain 358 458 IPR011990 GO:0005515
Bda01g01413 687 Gene3D Tetratricopeptide repeat domain 121 255 IPR011990 GO:0005515
Bda01g01413 687 Gene3D Tetratricopeptide repeat domain 479 687 IPR011990 GO:0005515
Bda01g01413 687 Gene3D Tetratricopeptide repeat domain 3 120 IPR011990 GO:0005515
Bda01g01413 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Bda01g01413 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Bda01g01413 687 PANTHER - 359 685 - -
Bda01g01413 687 PANTHER - 6 196 - -
Bda01g01413 687 PANTHER - 192 433 - -
Bda01g01413 687 Pfam PPR repeat family 505 552 IPR002885 -
Bda01g01413 687 TIGRFAM PPR: pentatricopeptide repeat domain 171 196 IPR002885 -
Bda01g01413 687 TIGRFAM PPR: pentatricopeptide repeat domain 70 98 IPR002885 -
Bda01g01413 687 TIGRFAM PPR: pentatricopeptide repeat domain 508 542 IPR002885 -
Bda01g01413 687 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Bda01g01413 687 Pfam E motif 623 684 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01413 - - - bhj:120067076 933.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01413 Bda-Chr1:50044079 Bda10g00193 Bda-Chr10:6760901 6.32E-50 dispersed
Bda01g01413 Bda-Chr1:50044079 Bda07g01450 Bda-Chr7:26960237 9.32E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g313 . . . . . . . . Cmo04g02450 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00193 . Bda01g01413 Bpe02g01626 . . . . . . . . Car04g02262 . Cpe01g02030 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009162 1 3 1 0 1 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31