Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01416 ATGGTGGTGGAGAGAGTTCAGGATATTGCAAAGTCAGTGATGAAATTCTCAGTCTCTATACCTGAAGAGTTCGTCAGATTAGAGTCTGAGCAGCCGGGAATCACCACCGTCCACGGCAAAGAACTGGGCGTTCCGACCATCGACTTCAGCAACCCAGATGAGGAACGTGTGGTGTACGCCATTGCTGAAGCTTGCAAGAGCTGTGGGATGTTTCAGATCGTCAACCATGGAATTCCTGATGAAGTTATCAAGAAATTGCAGGAGGTTGGAGGGGAGTTCTTCCGTCTTCCTCACGAGGAGAAGGAGGTTTATGCTAAGCCTCCTGGTTCTAAATCAGTCGAAGGGTATGGAACTAAGCTGCAGAAAGAAGCAGACGGGAAGAAAGGATGGGTTGATCATTTGTTTCATAAAATATGGCCTCCTTCGTCCATTGATTATCAATTTTGGCCTAAGAAACCTTCCTCTTACAGAGAAGCGAACGAGGAGTACGCAAAGTACATGCGAGAAGTAGTCAAACAGCTGTTCAGGAGTTTATCATTAGGGTTAGGACTAGAAGCAGGAGAGATGGAGAAAGCATTTGGAGGAGAAATGTTGGAATATCTTCTGAAAATAAACTACTATCCACCATGTCCACGCCCTGATCTAGCTCTCGGAGTGGTGGCTCACACAGACATGTCGACCTTAACCATCCTCGTCCCTAACCATGTGCCGGGTCTCCAAGCTTTCAGCGATGGCCGCTGGTTTAACGTCAAATACATCCCTAACGCCCTCGTCGTCCATATCGGCGATCAAATCGAGATCTTGAGCAACGGCATTTACAAGAGTGTGCTTCACCGGACGACAGTGGACAAAGTGGAGGCAAGGATGTCGTGGCCGGTCTTCATCGAACCGCCGCTCGACGTGGAAATCGGCTCCCACCCTAAATTAGTTGGCCATGACAATCTTCCTAAGTACAAAACTAAGAAATACGGTGACTATGTCTACTGCAAGCTCAACAAGCTTCCTCAACTTCTGGATTCGATGGCCGAGGCCAAGAGATCGACGGGCTCTGTTAGGTGGTTCAGCTCGCAGAAAGGGTTCGGCTTTATATCGCCTGACGATGGTGGGGAGGATCTCTTCGTTCATCAGACTTCCATCAGATCTCAAGGCTTTCGAACGCTTTTAGATGGCCAAGAAGTTGAGTTCTCCGTTGATTTTGACGAAGATCAGCGACCCAAAGCCGTGGATGTAACCACTGCGGCTGGATCTAGCCGTCCCAGTGGCGGACGGGGTGGAGATAGAGGCAGAGGCGGGAGATTTAGTGGAAGAGGCGGTGGCGGCGGTGGTTATGGAAGAAATTCTGGCTACGGCGGTCGTGGCTATGGCGGGGGAGGCCCTTCCGGTGGTGGAGGTAGTGGGGTTGAGTGTTACAACTGTGGCCGAGTGGGTCATTTGGCTCGTGATTGCTACCAGCGGACTGGAAGCGGACCTTCCCGCGGCGGCCGGACTTACGGTGGTGGTCGTGGTTCTGGCGGCGGTGGAGTGTGTTACAATTGTGGAGAGGAAGGGCATTTTGCCAGAGATTGTCCAAACGATCAGAATTGA 1584 50.95 MVVERVQDIAKSVMKFSVSIPEEFVRLESEQPGITTVHGKELGVPTIDFSNPDEERVVYAIAEACKSCGMFQIVNHGIPDEVIKKLQEVGGEFFRLPHEEKEVYAKPPGSKSVEGYGTKLQKEADGKKGWVDHLFHKIWPPSSIDYQFWPKKPSSYREANEEYAKYMREVVKQLFRSLSLGLGLEAGEMEKAFGGEMLEYLLKINYYPPCPRPDLALGVVAHTDMSTLTILVPNHVPGLQAFSDGRWFNVKYIPNALVVHIGDQIEILSNGIYKSVLHRTTVDKVEARMSWPVFIEPPLDVEIGSHPKLVGHDNLPKYKTKKYGDYVYCKLNKLPQLLDSMAEAKRSTGSVRWFSSQKGFGFISPDDGGEDLFVHQTSIRSQGFRTLLDGQEVEFSVDFDEDQRPKAVDVTTAAGSSRPSGGRGGDRGRGGRFSGRGGGGGGYGRNSGYGGRGYGGGGPSGGGGSGVECYNCGRVGHLARDCYQRTGSGPSRGGRTYGGGRGSGGGGVCYNCGEEGHFARDCPNDQN 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50063508 50074246 - Bda003659.1 Bda01g01416 1416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01416 527 SUPERFAMILY Retrovirus zinc finger-like domains 460 526 IPR036875 GO:0003676|GO:0008270
Bda01g01416 527 Gene3D - 500 527 - -
Bda01g01416 527 Gene3D - 463 495 - -
Bda01g01416 527 Pfam 'Cold-shock' DNA-binding domain 348 412 IPR002059 GO:0003676
Bda01g01416 527 SMART c2hcfinal6 508 524 IPR001878 GO:0003676|GO:0008270
Bda01g01416 527 SMART c2hcfinal6 468 484 IPR001878 GO:0003676|GO:0008270
Bda01g01416 527 Pfam 2OG-Fe(II) oxygenase superfamily 201 297 IPR044861 -
Bda01g01416 527 Gene3D - 1 335 IPR027443 -
Bda01g01416 527 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 16 333 - -
Bda01g01416 527 Pfam non-haem dioxygenase in morphine synthesis N-terminal 44 150 IPR026992 -
Bda01g01416 527 MobiDBLite consensus disorder prediction 404 444 - -
Bda01g01416 527 Pfam Zinc knuckle 508 524 IPR001878 GO:0003676|GO:0008270
Bda01g01416 527 Pfam Zinc knuckle 468 482 IPR001878 GO:0003676|GO:0008270
Bda01g01416 527 SUPERFAMILY Nucleic acid-binding proteins 345 411 IPR012340 -
Bda01g01416 527 CDD CSP_CDS 348 411 IPR002059 GO:0003676
Bda01g01416 527 PANTHER OS02G0767300 PROTEIN 16 333 - -
Bda01g01416 527 Gene3D - 336 411 IPR012340 -
Bda01g01416 527 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 197 297 IPR005123 -
Bda01g01416 527 ProSiteProfiles Zinc finger CCHC-type profile. 469 482 IPR001878 GO:0003676|GO:0008270
Bda01g01416 527 PRINTS Cold shock protein signature 349 364 IPR002059 GO:0003676
Bda01g01416 527 PRINTS Cold shock protein signature 385 403 IPR002059 GO:0003676
Bda01g01416 527 PRINTS Cold shock protein signature 370 379 IPR002059 GO:0003676
Bda01g01416 527 ProSiteProfiles Cold-shock (CSD) domain profile. 346 412 IPR002059 GO:0003676
Bda01g01416 527 SMART csp_8 348 413 IPR011129 GO:0003676
Bda01g01416 527 ProSitePatterns Cold-shock (CSD) domain signature. 360 379 IPR019844 -
Bda01g01416 527 ProSiteProfiles Zinc finger CCHC-type profile. 509 524 IPR001878 GO:0003676|GO:0008270
Bda01g01416 527 SUPERFAMILY Clavaminate synthase-like 18 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01416 K05278 FLS; flavonol synthase [EC:1.14.20.6] - qsu:112004171 501.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01416 Bda-Chr1:50063508 Bda08g00537 Bda-Chr8:5388294 1.80E-84 dispersed
Bda14g00610 Bda-Chr14:4590760 Bda01g01416 Bda-Chr1:50063508 3.43E-37 dispersed
Bda15g01039 Bda-Chr15:19432940 Bda01g01416 Bda-Chr1:50063508 6.56E-37 dispersed
Bda13g01448 Bda-Chr13:37192294 Bda01g01416 Bda-Chr1:50063508 1.39E-110 transposed
Bda01g01416 Bda-Chr1:50063508 Bda13g01488 Bda-Chr13:37811244 5.59E-70 wgd
Bda01g01416 Bda-Chr1:50063508 Bda03g00526 Bda-Chr3:4396063 6.16E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g305 . . . . . Bpe04g00480 . . Cmo04g02456 . . . . . . . . . . . . . . . Cla08g00561 Cam08g0978 Cec08g0568 Cco08g0677 Clacu08g0685 . Cre08g0500 . . . . . . . . . Blo18g00190 . Bda01g01416 . . Bma01g00830 . . . . . . Car04g02274 . Cpe01g02036 . . . . . . . . . . . . . . . Lsi08g00410 . Chy03g00353 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003902 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15447 PF14226 DIOX_N 2.40E-24 CL0029 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01416 Bda_Chr01 FPKM 12.290625 13.925261 7.694551 7.800039 8.851604 8.989633 9.158675 4.629608 4.141215