Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01418 ATGATTGAGAGAGTCGATAATGGCGATAAGGAGAAGAAGAAGAAGCGCCGATCTACTCGTCGATATAAGCAGAGCGCCTCTTCTCTTACATCAGCATCTTGTCGTTCAATCAATGAAATAAATGGGGCGGCCTCAGCATGCTCAAAAAATGTCAGAATAGTTAACCATGGGGCAGGACCTTTGAATGATCCTTCTTTAAAGGAATGTACAGTTGACACTCTCTCTCCCATTGAAGATGGGCCGATGAGTGAAATCAATGTTTCTTTTAGTTCTTTGCCAACTATGTACATCAGTGAACAAGGGGATATACCGGAGATACAAATCTCAAAAAATCAACACCTTTCTTCTAATGACAGTGGAAGTGTAGTTTCAAAATCATGTTCTCAACTTGATCAAGGGGTAATAATGGACTCTCAAATCGCAAAAAATGAGCGTGTTTCTTCTAATGGTCATGGAAGTGCACAGTCAAAATCCCATTCTTGTGATATTGGTTATCGTGGATCATATACAAATAATTGTTTGTCTTCTTCAAATCAAGTTGAAGGTCATAGTCGAAAGAAATATTTTTCTCCACACTGGTCCCTGGATGCTATTAATGGGGCTATTCAGAAAGGTGATATATTTAAAGCAGTTTTCCGTGTTAATGCTTATAATAAGCTTGAGGCCTACTGCAAAATTGAAGGTGTGCCAACAGATATTCTCGTTAATGGAATTTCCTTGCAGAATAGAGCTGTGGAAGGGGACGTGGTTGCATTGAAGGTAGATCCTGTAATGTCATGGACCAAAATGAGGGGGTCAATTGAGGTATCTAACAATGAAGCAACGGGAAAAGATAGTGATTTACTCATTAAAGATAATGAAATTGAGGTTTACAATTGCAAAGGCAAGTGCAAGGGAGATGGTGAATTCGAGTGTAGCTATTTAGATTCCCAATCTCCTTCCAAGGAGGAGGTATCTAATGAGTGCGAGACTCTAACTTGTGACAATCTGTTAGATGGATGCCACTTCTCAAATGCGCTGAAAAAGTTGTGTGATACGATTGGTTCATTTCCTTCGAAAAGACCGACTGGTAGGGTTGTAGCAATCATTGAAAGGTCTAGCCAACGAGATACTGTTGTTGGATATCTCAATATAAAGGCGGTGGTAACTTGCATGGAATATCAGAAAGAGGTGAAGAAGAACAATGTTTTTTTTCCATTCTCTGACCATGATTTCATCCAGCTGACACCAACTAACCCTAAATTTCCAGAAATGATGGTTTTTGTGAGAGATCTACCTGACTGCATCAAGAAGAGGTTAGAGGAAGGTGATGCAACAGTCAAAAGTGAGCTGTTAGGAGTACGAATTGGAGATTGGGCAGAGGAAAGTTCTATTCCACAAGCCCAAATACTGCATATATTGGGGAGAGGAGGAGAAATTGAATCACATATTAATGCTATATTGTTTGAAAATAATATCCGTACATCTGAATTTTCTCCTGACTTACTTCCTTGGCTACCACATGGTACTTGGGAGGTCCCACTCAATGAATATCACGGAAGAAAAGACCTTAGAAATTTATGCATATTTACTATTGATCCTGCAACTGCGACTGACCTAGATGATGCTCTTTCAGTTGAAGTGTTAGCTAATAATGTTTACAGGGTAGGTGTACATATTGCGGATTTGTCACATTTTGTATTACCTGACACCGCATTGGACATGGAAGCTCAAATGCGGTCATCAAGTGTCTATCTGGTGGACCGCAAAGTACCAATGTTGCCTCCATTAGTTTCTGAGAATATGTCACTAAATCCTGGCGAGAATAGATTAGCATTTTCTTTACTTTTTAACCTTGATCATACTGGGGATCTTATAGACCGTTGGATTGGTCGTACAGTGATACAATCTTGTTGCAAGCTTTCGGACGAACATGCTCAATACATTATTGATGGGTTATTTGATGCCGAGAGTTCTGTAATTTCGAAGAATGTCTATCCCCAATTGCATGGTCAATTTCAATGGCATGATGTAATAACATCTGTCAAGATCCTGAATGATATTTCGAAAGCTTTAAGAAAGAAGAGGTTTAGCAAGGGCGCTCTACAACTTGAAAGCTCCAGAGTAGTTTTTGTCCTGGATGAGTGTGGAATCCCATATGATAGCATGCTTTCCGAATGGAATGACTCAAACTTTCTTGTTGAGGAGTTTATGCTTCTGGCAAATGCAACAGCTGCTGAAGTCATATCTAGGGCCTTTTCTGATAGTGCATTGCTTAGGAGACACCCTGAGCCTAATATTAGGAAGCTGAGAGAGTTTGAAGCGTTTTGTTTGAAACATAGTTTAGAGTTGGATGCTTCTTCTTCTGGCCAGTTCAATCAGTCTTTGGAGCGACTTAAGCAAAAACTCAAGAATGATTCAGTATTGTTTGATATTCTGAACTCCTATGCTTCAAGGACAATGCAACTAGCGATTTACTTCTGCAGTGGAGAGATTAAAGACAATGTAAAAGATTGGAATCATTACGCTCTTGCTGTTCCACTTTACACTCATTTTACTTCACCACTACGACGATATCCTGATATTATAGTGCATCGAATTCTTGCTGCTGCTGTGGAGGCTGAGAAGATTTTGAAGGATCAAAGTTCCTTTCAGAAAGTAAATAGGAGTATGGAGATAAGTGGAAGGTGTTTTACTGGTCTTCCTTTTGATAAAAATGCTGCAGAATCCGTGGAAGTGAGGGAAGCATTATCTGCTGCAGTACATAGGCAGAGAGTTCCCTGCACCGAACCACTGGTTAATATTGCTGCCTATTGTAATGAAAGAAAACTGGCTAGTCGACGTGTAAAGGATGCCTGTGATAAACTCTACATGTGGGCTATGCTGAAGAAAAATGAGATATGTTTTCTTTGA 2892 39.76 MIERVDNGDKEKKKKRRSTRRYKQSASSLTSASCRSINEINGAASACSKNVRIVNHGAGPLNDPSLKECTVDTLSPIEDGPMSEINVSFSSLPTMYISEQGDIPEIQISKNQHLSSNDSGSVVSKSCSQLDQGVIMDSQIAKNERVSSNGHGSAQSKSHSCDIGYRGSYTNNCLSSSNQVEGHSRKKYFSPHWSLDAINGAIQKGDIFKAVFRVNAYNKLEAYCKIEGVPTDILVNGISLQNRAVEGDVVALKVDPVMSWTKMRGSIEVSNNEATGKDSDLLIKDNEIEVYNCKGKCKGDGEFECSYLDSQSPSKEEVSNECETLTCDNLLDGCHFSNALKKLCDTIGSFPSKRPTGRVVAIIERSSQRDTVVGYLNIKAVVTCMEYQKEVKKNNVFFPFSDHDFIQLTPTNPKFPEMMVFVRDLPDCIKKRLEEGDATVKSELLGVRIGDWAEESSIPQAQILHILGRGGEIESHINAILFENNIRTSEFSPDLLPWLPHGTWEVPLNEYHGRKDLRNLCIFTIDPATATDLDDALSVEVLANNVYRVGVHIADLSHFVLPDTALDMEAQMRSSSVYLVDRKVPMLPPLVSENMSLNPGENRLAFSLLFNLDHTGDLIDRWIGRTVIQSCCKLSDEHAQYIIDGLFDAESSVISKNVYPQLHGQFQWHDVITSVKILNDISKALRKKRFSKGALQLESSRVVFVLDECGIPYDSMLSEWNDSNFLVEEFMLLANATAAEVISRAFSDSALLRRHPEPNIRKLREFEAFCLKHSLELDASSSGQFNQSLERLKQKLKNDSVLFDILNSYASRTMQLAIYFCSGEIKDNVKDWNHYALAVPLYTHFTSPLRRYPDIIVHRILAAAVEAEKILKDQSSFQKVNRSMEISGRCFTGLPFDKNAAESVEVREALSAAVHRQRVPCTEPLVNIAAYCNERKLASRRVKDACDKLYMWAMLKKNEICFL 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50084215 50088365 + Bda003661.1 Bda01g01418 1418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01418 963 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Bda01g01418 963 PANTHER DIS3-LIKE EXONUCLEASE 2 113 959 - -
Bda01g01418 963 SUPERFAMILY Nucleic acid-binding proteins 186 365 IPR012340 -
Bda01g01418 963 ProSitePatterns Ribonuclease II family signature. 834 858 IPR022966 -
Bda01g01418 963 MobiDBLite consensus disorder prediction 1 28 - -
Bda01g01418 963 SUPERFAMILY Nucleic acid-binding proteins 474 957 IPR012340 -
Bda01g01418 963 Gene3D - 177 284 - -
Bda01g01418 963 Pfam Dis3-like cold-shock domain 2 (CSD2) 406 485 IPR041505 -
Bda01g01418 963 PANTHER RIBONUCLEASE 113 959 - -
Bda01g01418 963 Pfam RNB domain 514 865 IPR001900 GO:0003723|GO:0004540
Bda01g01418 963 SMART RNB_2 514 867 IPR001900 GO:0003723|GO:0004540
Bda01g01418 963 Gene3D - 385 472 - -
Bda01g01418 963 SUPERFAMILY Nucleic acid-binding proteins 356 488 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01418 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] - jre:108988324 995.727
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00228 Bda-Chr1:26165138 Bda01g01418 Bda-Chr1:50084215 7.08E-17 dispersed
Bda01g01418 Bda-Chr1:50084215 Bda04g00210 Bda-Chr4:7973125 1.06E-86 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g297 . . . . . . . . Cmo04g02458 Cmo15g00709 . . . . Sed11g2304 . . Bhi04g02509 Tan11g0076 Cmetu03g1361 . . . Lcy10g2336 Cla08g00563 Cam08g0980 . Cco08g0679 Clacu08g0688 . Cre08g0502 . . Cone17ag1271 . . . . . Blo17g00182 . . Bda01g01418 Bpe02g01633 Bpe14g00376 Bma01g00828 Bma02g00223 . . . . . Car04g02276 Car15g00639 Cpe01g02038 . . . . . . . . . . . . . . . Lsi08g00412 . Chy03g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004396 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01418 Bda_Chr01 FPKM 16.606871 19.859016 11.146161 14.18125 17.428064 15.882211 17.703024 0.172193 0.0