Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01427 CAGGAGGCATTCAACGAATCTCACAGTGGCGAAGCATTATCAGCTGAAGTAATGTCAAATGATTTAACTATTAAAGAGGGTGTTGATGGAGATCTGGCTACAGAAGAAGATTTGAACAATAATGTGCAAAGTCTCTCAGAAAAGTTATCAGCCGCTCTTATGAATGTTCGTGCTAAAGAAGATTTGGTGAAGCAACACGCCAAAGTTGCTGAAGAAGCTATTGCCGGCTGGGAAAAGGCAGAAAATGAAGTTATAGTCTTAAAACAACAATTTGGGTCTGCAATTAAGCAAAAGTCAGCATTGGAAGATCAGGTGAGCCATCTTGATGCTGCCCTGAAGGAATGTGTTAGGCAACTAAGACAAACTAGAGATGAACAAGAGCAAAAGATCCAGGTAGCAGTGAAAGATAAAATCAACGATTTTGAATCTTCCAGACTGGATCTTGAGCAGCAGCTTCTTGAGATTCAAACCAAAGCAAAAGCTGCTCAGAAAAAATCTTCCCATACTAATCTCGAACTTTCCAACAAGATTGAATCCTTGGAAAAAGAAAATTCAGCCCTCAAGCACGAGCTTTATGCACAGTCTGAGGAGCTTGAAATCCGGGCGATTGAGAGAGATTTAAGCACACAAGCAGCTGAAACTGCTAGCAAGCAGAATCTAGAAAATTTAAAGAAGGTAGCCAGGCTTGAGGCTGAATGCAGAAGACTAAAATCCAGAGCCACTCCACCTTCCTCCACTTACGTCGAATCTCTCACTGATAGTCAATCAGATGGTGGAGAGCGTTTGACTGCCGTCGATATTGACACTCATAAGATCCAATTTAAGAATGAAAAGGGTACTGTCAGTAGTCTACCTTCTTCCATTGAAATATCTCTCATGGACGATTTTCTCGAGATGGAACGGCTTGCTGCCATGCCTGAGTCTGAAACTGGAGATGTTTGCGTAGGATTAGAAGCCATTGCCAGAGAAAGTTCCTTGAGAGTTGAAATTGAGACACTGATGTCACAGACGATGGAAATGGAAGAGAAGCTAGAGAAGATGGAAGATTTGAATGCTGAACTAGAAGAGAAGTTGGTCAAGATGAAAGAAGAGAAAGATGAACTGGAACAGAAGTTAGAAAAGATAAAAGAAGAGAAAGACGAACTGGAAAACAGGTTAGAAGAGATGAAAGAAGAGAACCATGAGCTAGAAGAGAAGTTCGAGAAAATAAACACAGACAAAGCTGATATGGAGATTTCTCTTGACAAAAGTAAAGACAGCATTAAGAAATCAGAGCTTCAGCTGAAGGAAGCAGTAAAAAAGATGGAAGAGCTCCAAAAGGAGCTAATTATTGCAAATGACTCAAAACAAAGTATGGAAGCTCTACTAGGAAGTGTGGAAGCCGAGTCTCAAACCCTGTCGGACAAGTTTATTTCACTGGAACATGAAGTCGAGAAGGAGAGAATTTTTTCGGAGGAAATGAAAATCCAGTGCCATGAATTAGAGGAGGAACTGATTAGAATGAAAGAAGATAAAATCAGGCAAATGACAAATAAAGAGCCAAAGATAAAGCAGGAGGACTTGGCTGCGGCTGCTGGAAAACTAGCCGAGTGTCAAAAGACGATAGCATCCCTCGGGAATCAACTCAAATCTCTAGCAACATTAGACGAATTTCTAACCGACACGTCATCAGCAGCGAAATTCTCCGAAGGTATAAGCCTACATTCGAAAGCTGGTGTACACAAGCACCAACAGTCAAATGGATCGTTTTCGCCAAAAAGAGTGGATTACTTGGAAGTAGTTGATGTTACTCCAAATAGTAAGAGTGAAGATAACTCCCCACCTTCATCGACATCTTCCTCGGCTTCGTCTGTTTTAGTGTCGGCTCATGTTAGTTCGGAGAAAAACCGAAACGGGTTTGCCAAGTTTTTCTCAAGGACTAAGAGTGGAATAAGACTGGAGATTTAG 1947 41.29 QEAFNESHSGEALSAEVMSNDLTIKEGVDGDLATEEDLNNNVQSLSEKLSAALMNVRAKEDLVKQHAKVAEEAIAGWEKAENEVIVLKQQFGSAIKQKSALEDQVSHLDAALKECVRQLRQTRDEQEQKIQVAVKDKINDFESSRLDLEQQLLEIQTKAKAAQKKSSHTNLELSNKIESLEKENSALKHELYAQSEELEIRAIERDLSTQAAETASKQNLENLKKVARLEAECRRLKSRATPPSSTYVESLTDSQSDGGERLTAVDIDTHKIQFKNEKGTVSSLPSSIEISLMDDFLEMERLAAMPESETGDVCVGLEAIARESSLRVEIETLMSQTMEMEEKLEKMEDLNAELEEKLVKMKEEKDELEQKLEKIKEEKDELENRLEEMKEENHELEEKFEKINTDKADMEISLDKSKDSIKKSELQLKEAVKKMEELQKELIIANDSKQSMEALLGSVEAESQTLSDKFISLEHEVEKERIFSEEMKIQCHELEEELIRMKEDKIRQMTNKEPKIKQEDLAAAAGKLAECQKTIASLGNQLKSLATLDEFLTDTSSAAKFSEGISLHSKAGVHKHQQSNGSFSPKRVDYLEVVDVTPNSKSEDNSPPSSTSSSASSVLVSAHVSSEKNRNGFAKFFSRTKSGIRLEI 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50184361 50186842 + Bda003672.1 Bda01g01427 1427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01427 648 Pfam Filament-like plant protein, long coiled-coil 59 158 IPR008587 -
Bda01g01427 648 Pfam Filament-like plant protein, long coiled-coil 166 237 IPR008587 -
Bda01g01427 648 Pfam Filament-like plant protein, long coiled-coil 391 547 IPR008587 -
Bda01g01427 648 MobiDBLite consensus disorder prediction 238 259 - -
Bda01g01427 648 MobiDBLite consensus disorder prediction 594 626 - -
Bda01g01427 648 Coils Coil 138 165 - -
Bda01g01427 648 Coils Coil 219 239 - -
Bda01g01427 648 Coils Coil 35 55 - -
Bda01g01427 648 Coils Coil 116 136 - -
Bda01g01427 648 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 11 647 - -
Bda01g01427 648 Coils Coil 170 213 - -
Bda01g01427 648 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 11 647 - -
Bda01g01427 648 Coils Coil 330 455 - -
Bda01g01427 648 MobiDBLite consensus disorder prediction 598 626 - -
Bda01g01427 648 MobiDBLite consensus disorder prediction 239 259 - -
Bda01g01427 648 Coils Coil 484 512 - -
Bda01g01427 648 SUPERFAMILY Tropomyosin 337 535 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01427 - - - csv:101206243 548.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01427 Bda-Chr1:50184361 Bda10g00317 Bda-Chr10:32778611 3.69E-103 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g263 . . . . . . . . . Cmo15g00692 . . . . Sed01g3126 . . Bhi04g01916 Tan11g1279 Cmetu03g0859 . Hepe02g2273 . Lcy10g1224 . . . . . . . . . . . . . . Cme03g00560 . . . Bda01g01427 Bpe02g01641 . Bma01g00819 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy03g00801 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003586 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 2 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01427 Bda_Chr01 FPKM 0.0 0.0 0.308477 0.0 5.242862 5.314331 3.964241 0.0 0.230625