Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01441 ATGGTCGTTGTTCTTGCAGACCTTGGGTCGACAGTTACCGCTCAACTTGAATCAGAATTGCAATTGAAGACTGTTCAGAACTTCATTATCAAAAGACCATGGCTTGATCTTTATGGGGTTAATGTAAGGCCTATTGCACCAATTGGAAGTGCTAGTCGGAAGCCATGTGTTGATCCTGCACTAATACATCGCACTTTGCCCGAGGAGATGCTAATTGAGGTATTTACACAACTGACTCCATATGACTTGGCAAGGGCATCCTGTGTTTGTCGAAAATGGAAATACATCATCCGAAATCCTGAGTTTTGGCGCAGGGCTTGTTTGAAGGCTTGGCAGATATCTGGAGTGGTTGAAAACTACAAAATTTTACAATCGAAGTATGGTGGATCGTGGAAAAAGATGTGGCTTTTGAGACCGAGGATTCGCTCTGATGGAATTTATGTCAGCAGGAATACTTATTTTCGTGCTGGAGTTTCACAGTGGAAGGTTTCAAATCCAGTTCACCTGATCTGCTACTACCGTTATATGAGATTTTCTCACTCAGGTCGATTTCTCTACAAGATTTCTTCTCAAAAGCTCAAGGATGTGGCAAAATACATGAACTTCCGTGCTTCGAAAGTAAATTGTATCTATCGTGGCCATTACAAATTGTCTGAGGACATGATTGAAGCTGCTATTTTGTACCCAGGCTTGCGTCCAACTGTTCTGAGAATCCGGTTAAGGGTAAGAGGAACTAGTACAGGTGCCAACAATAGGATGGATCTTTTGTCTCTTGTGACAAGTGGGATGAATGACTCGGAGATCATGGGTCCTGATGAAGACATCCTTGGAATAGTTGAAGGATGGGATGATGATGAAACCCATAATCCAGACGTGCCTGCAATTTCACACAAGAAAGGTCTCACGCCTTTTATCTTTGTTCCCTTTGAAGAGGTTGAAACATCAGAGCTTAATCTTCCTGTCGAGGAGATGGATTATTTCGTACCAGGTTAA 993 42.5 MVVVLADLGSTVTAQLESELQLKTVQNFIIKRPWLDLYGVNVRPIAPIGSASRKPCVDPALIHRTLPEEMLIEVFTQLTPYDLARASCVCRKWKYIIRNPEFWRRACLKAWQISGVVENYKILQSKYGGSWKKMWLLRPRIRSDGIYVSRNTYFRAGVSQWKVSNPVHLICYYRYMRFSHSGRFLYKISSQKLKDVAKYMNFRASKVNCIYRGHYKLSEDMIEAAILYPGLRPTVLRIRLRVRGTSTGANNRMDLLSLVTSGMNDSEIMGPDEDILGIVEGWDDDETHNPDVPAISHKKGLTPFIFVPFEEVETSELNLPVEEMDYFVPG 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50320956 50325683 + Bda003686.1 Bda01g01441 1441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01441 330 Pfam F-box only protein C-terminal region 120 330 IPR045464 -
Bda01g01441 330 Gene3D - 53 144 - -
Bda01g01441 330 ProSiteProfiles F-box domain profile. 60 106 IPR001810 GO:0005515
Bda01g01441 330 PANTHER F-BOX ONLY PROTEIN 9 51 314 - -
Bda01g01441 330 PANTHER F-BOX ONLY PROTEIN 48-RELATED 51 314 IPR045118 GO:0019005|GO:0031146
Bda01g01441 330 Pfam F-box-like 64 109 IPR001810 GO:0005515
Bda01g01441 330 SUPERFAMILY F-box domain 64 142 IPR036047 GO:0005515
Bda01g01441 330 SMART fbox_2 66 106 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01441 K10295 FBXO9; F-box protein 9 - cit:102608110 547.74
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g255 . . . . . . . . . . . Cma09g00791 . . . Cpe06g00624 . . . . . . . . . . . . . . . Cone4ag1413 Cone7ag1525 . . Lsi04g02394 Csa04g01794 . . . . . Bda01g01441 Bpe02g01645 . . . . . Cmo09g00783 . . . Car09g00704 . . Bhi09g02687 . . . . . . Cla11g01539 Cam11g1600 Cec11g1629 Cco11g1630 Clacu11g1757 Cmu11g1573 Cre11g1991 . . Chy07g00633 Cme07g00847
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013943 1 2 0 0 1 0 1 0 0 1 0 0 1 1 1 1 0 2 1 0 1 1 1 1 1 0 1 2 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01441 Bda_Chr01 FPKM 5.248227 5.938941 12.053082 11.076348 10.793335 8.242418 10.685052 10.071409 9.478781