Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01446 ATGTCGACCCAGAATCGCCGTTCGTCGTTTTCGTCCTCCACGTCGTCTTCATTGGCGAAGAGGCAAGCGCCGTCGGAGAATATGGGGAAGGCTGCGGCGGTTCCGACTCATCTCGCAAAGAAGCGGGCGCCTCTCGGAAACATCACCAATTTGAAGGGTGCTCCCGTCCCTTCTTCTACTATGGCACCGCATACAACAAAAATTTCCAAGGGTAAGAAATGTTCCCCTGCAGGAAATGGCAGCCCAACCTTACAAGGAAGTCAGCTGCCTGCAATGGTTAATGTTAAATCTACTTCAACATTTCCTCTCAAACCTACAACTTTCCCAAAATGTGAAGTGATCATCCCTTCCCCAGCAGTGATCCCACCTCCTAGCAGCATGGATGTTTCTCCAAGTAAATCAGATGGAAGTTCAGTTTCTTTGGATGAGACAATGTCTACTTCTGATTCCTTTAAGAGTCCTGAAGTTGAGTACTTAGACAACAATGATGTACCCACTGTCGATACTATCGAGAGGAAAGCATTAAGCAATCTCTACATTTCAGACCATCAAGTAGACAAAACTGATGGGAATCTTTGCAATAGAGATATGCTTTTTGACCTTCAGAGAGACGGGAAATTTGTGGATATTGATAATAACTACGAAGATCCACAGATGTGTGCTACCATTGCTTGTGATATTTACAAGCATTTGCGCGCATCGGAGGCAAAGAAAAGGCCTTCCACTGATTTCATGGAGAGGATTCAGAAGGATATAAGTGCTAACATGCGTGCCATTTTAATCGATTGGCTTGTGGAGGTAGCTGAAGAATACAGATTAATCCCCGATACGCTCTATTTGACTGTAAATTACATTGATCGATATCTCTCTGGTAATGCAATGGACAGACAAAGATTACAGCTGCTTGGGGTTGCCTCCATGATGATTGCTTCGAAGTATGAGGAGATATGTGCGCCACAAGTGGAAGAATTTTGTTATATTACGGACAATACATATTTTAAGGAAGAGGTATTGCAAATGGAATCATCTATGTTGAACTACTTGAAGTTTGAAATGACTGCACCAACAACTAAGTGTTTTCTAAGGCGATTTGTTCGTGTTGCTCAAGGGATAGATGAGGTTCCATCAATGCAAATAGAATGCTTAGCTAACTACCTTGCCGAGCTGTCGCTTATCGAATACAGCATGCTCGTTTATTCTCCGTCACTCATTGCCGCTTCAGCCATTTTCTTGGCGAAGTTCATCCTCTGTCCGACTAAGAGACCATGGAACTCCATATTGCAGCATTACACTCTTTACCAGCCTTGTGATCTGAGAGACTGCGTAAAGAACTTGCATAGACTGTGTTGTCGCACTCCAACTTCTAGCCTACCAGCCATTAGAGAGAAATACAGCCAACACAAGTACAAACAGGTGGCTAGAAAACACTGTCCTCCAGTCTTACCTTCTGAGTTTTTCTACAATGAAATCCAA 1473 43.52 MSTQNRRSSFSSSTSSSLAKRQAPSENMGKAAAVPTHLAKKRAPLGNITNLKGAPVPSSTMAPHTTKISKGKKCSPAGNGSPTLQGSQLPAMVNVKSTSTFPLKPTTFPKCEVIIPSPAVIPPPSSMDVSPSKSDGSSVSLDETMSTSDSFKSPEVEYLDNNDVPTVDTIERKALSNLYISDHQVDKTDGNLCNRDMLFDLQRDGKFVDIDNNYEDPQMCATIACDIYKHLRASEAKKRPSTDFMERIQKDISANMRAILIDWLVEVAEEYRLIPDTLYLTVNYIDRYLSGNAMDRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSMLNYLKFEMTAPTTKCFLRRFVRVAQGIDEVPSMQIECLANYLAELSLIEYSMLVYSPSLIAASAIFLAKFILCPTKRPWNSILQHYTLYQPCDLRDCVKNLHRLCCRTPTSSLPAIREKYSQHKYKQVARKHCPPVLPSEFFYNEIQ 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50385131 50388178 + Bda032953 Bda01g01446 1446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01446 491 Gene3D - 226 473 - -
Bda01g01446 491 CDD CYCLIN 256 345 IPR013763 -
Bda01g01446 491 PANTHER CYCLIN-A1-1 30 488 - -
Bda01g01446 491 SMART cyclin_7 359 447 IPR013763 -
Bda01g01446 491 SMART cyclin_7 262 346 IPR013763 -
Bda01g01446 491 PANTHER CYCLINS 30 488 IPR039361 -
Bda01g01446 491 Gene3D - 240 353 - -
Bda01g01446 491 MobiDBLite consensus disorder prediction 127 153 - -
Bda01g01446 491 MobiDBLite consensus disorder prediction 1 23 - -
Bda01g01446 491 MobiDBLite consensus disorder prediction 76 90 - -
Bda01g01446 491 MobiDBLite consensus disorder prediction 52 66 - -
Bda01g01446 491 CDD CYCLIN 353 446 IPR013763 -
Bda01g01446 491 MobiDBLite consensus disorder prediction 119 153 - -
Bda01g01446 491 MobiDBLite consensus disorder prediction 1 90 - -
Bda01g01446 491 PIRSF Cyclin_A_B_D_E 1 487 IPR039361 -
Bda01g01446 491 SUPERFAMILY Cyclin-like 355 479 IPR036915 -
Bda01g01446 491 Pfam Cyclin, C-terminal domain 355 475 IPR004367 -
Bda01g01446 491 SUPERFAMILY Cyclin-like 215 352 IPR036915 -
Bda01g01446 491 SMART Cyclin_C_2 355 479 IPR004367 -
Bda01g01446 491 Pfam Cyclin, N-terminal domain 226 352 IPR006671 -
Bda01g01446 491 ProSitePatterns Cyclins signature. 257 288 IPR006671 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01446 K06627 CCNA; cyclin-A - qsu:112028095 685.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00581 Bda-Chr1:32830373 Bda01g01446 Bda-Chr1:50385131 1.65E-102 dispersed
Bda01g00725 Bda-Chr1:34532308 Bda01g01446 Bda-Chr1:50385131 6.92E-103 dispersed
Bda01g01446 Bda-Chr1:50385131 Bda13g01473 Bda-Chr13:37627034 2.62E-17 dispersed
Bda11g00693 Bda-Chr11:6914682 Bda01g01446 Bda-Chr1:50385131 9.10E-52 dispersed
Bda01g01446 Bda-Chr1:50385131 Bda01g01454 Bda-Chr1:50454887 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00140 . 1 294 Core Cell Cycle Gene Families AT3G48750 85.4 3.0e-149 524.6
Bda14g00385 . 1 291 Core Cell Cycle Gene Families AT3G48750 84.9 4.4e-148 520.8
Bda01g00078 . 1 300 Core Cell Cycle Gene Families AT3G48750 57.5 1.1e-95 346.7
Bda01g00078 . 1 305 Core Cell Cycle Gene Families AT3G54180 82.5 3.5e-148 521.2
Bda15g00140 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.4 1.5e-90 329.7
Bda14g00385 . 1 287 Core Cell Cycle Gene Families AT3G54180 54.3 2.2e-89 325.9
Bda01g00078 . 1 305 Core Cell Cycle Gene Families AT2G38620 69.5 7.3e-120 426.8
Bda01g00078 . 1 300 Core Cell Cycle Gene Families AT1G76540 65.7 1.8e-115 412.5
Bda15g00140 . 1 290 Core Cell Cycle Gene Families AT1G76540 52.3 1.4e-91 333.2
Bda14g00385 . 1 287 Core Cell Cycle Gene Families AT1G76540 52.2 5.3e-91 331.3
Bda01g00078 . 1 305 Core Cell Cycle Gene Families AT1G20930 66.0 3.0e-118 421.8
Bda15g00140 . 1 290 Core Cell Cycle Gene Families AT1G20930 54.0 7.9e-95 344.0
Bda14g00385 . 1 287 Core Cell Cycle Gene Families AT1G20930 53.2 2.5e-93 339.0
Bda02g00600 . 1 436 Core Cell Cycle Gene Families AT5G10270 81.0 2.4e-202 701.8
Bda09g00506 BCT 42 358 Core Cell Cycle Gene Families AT5G10270 55.6 6.5e-99 358.2
Bda03g00348 . 150 466 Core Cell Cycle Gene Families AT5G10270 53.6 6.5e-99 358.2
Bda11g00934 . 150 478 Core Cell Cycle Gene Families AT5G10270 51.6 8.5e-99 357.8
Bda10g01151 . 147 473 Core Cell Cycle Gene Families AT5G10270 51.3 1.8e-96 350.1
Bda13g00161 . 99 415 Core Cell Cycle Gene Families AT5G10270 53.5 2.3e-96 349.7
Bda08g01030 . 115 430 Core Cell Cycle Gene Families AT5G10270 52.6 2.5e-95 346.3
Bda11g01584 . 93 419 Core Cell Cycle Gene Families AT5G10270 51.1 4.3e-95 345.5
Bda14g00861 BCT 116 432 Core Cell Cycle Gene Families AT5G10270 52.9 1.8e-93 340.1
Bda06g00303 . 37 343 Core Cell Cycle Gene Families AT5G10270 51.7 8.5e-91 331.3
Bda11g00865 . 114 325 Core Cell Cycle Gene Families AT5G10270 50.7 3.5e-60 229.6
Bda06g00304 . 2 174 Core Cell Cycle Gene Families AT5G10270 50.6 2.7e-44 176.8
Bda02g00600 . 65 442 Core Cell Cycle Gene Families AT5G64960 76.8 4.1e-161 564.7
Bda09g00506 BCT 96 358 Core Cell Cycle Gene Families AT5G64960 55.8 4.5e-83 305.4
Bda03g00348 . 204 466 Core Cell Cycle Gene Families AT5G64960 54.0 1.0e-82 304.3
Bda11g00934 . 204 468 Core Cell Cycle Gene Families AT5G64960 52.9 2.3e-82 303.1
Bda06g00303 . 81 345 Core Cell Cycle Gene Families AT5G64960 52.5 9.5e-81 297.7
Bda10g01151 . 201 463 Core Cell Cycle Gene Families AT5G64960 52.9 1.6e-80 297.0
Bda11g01584 . 147 409 Core Cell Cycle Gene Families AT5G64960 51.4 1.5e-78 290.4
Bda13g00161 . 153 415 Core Cell Cycle Gene Families AT5G64960 52.2 3.4e-78 289.3
Bda08g01030 . 166 430 Core Cell Cycle Gene Families AT5G64960 51.4 9.8e-78 287.7
Bda14g00861 BCT 170 434 Core Cell Cycle Gene Families AT5G64960 51.8 2.8e-77 286.2
Bda07g00297 BCT 139 378 Core Cell Cycle Gene Families AT5G64960 53.1 4.1e-68 255.8
Bda11g00865 . 165 340 Core Cell Cycle Gene Families AT5G64960 51.1 7.3e-49 191.8
Bda15g00504 . 4 403 Core Cell Cycle Gene Families AT1G73690 74.8 7.0e-173 603.6
Bda15g00504 . 12 339 Core Cell Cycle Gene Families AT1G66750 75.7 1.6e-152 535.8
Bda15g00504 . 8 404 Core Cell Cycle Gene Families AT1G18040 76.0 6.9e-173 603.6
Bda10g00416 . 35 500 Core Cell Cycle Gene Families AT5G63610 75.1 2.9e-194 674.9
Bda01g01446 . 4 488 Core Cell Cycle Gene Families AT1G44110 59.9 2.1e-152 535.8
Bda01g01454 . 4 475 Core Cell Cycle Gene Families AT1G44110 57.0 1.1e-140 496.9
Bda13g01473 . 249 649 Core Cell Cycle Gene Families AT1G44110 53.0 1.0e-114 410.6
Bda01g00725 . 206 469 Core Cell Cycle Gene Families AT1G44110 53.8 4.2e-81 298.9
Bda03g00056 . 358 605 Core Cell Cycle Gene Families AT1G44110 54.2 2.5e-73 273.1
Bda01g00725 . 206 467 Core Cell Cycle Gene Families AT1G77390 53.8 1.0e-76 284.3
Bda01g00725 . 9 469 Core Cell Cycle Gene Families AT5G25380 52.6 3.4e-112 402.1
Bda03g00056 . 369 617 Core Cell Cycle Gene Families AT5G25380 68.7 3.6e-93 339.0
Bda01g01446 . 206 478 Core Cell Cycle Gene Families AT5G25380 54.2 3.5e-80 295.8
Bda03g00194 BCT,CCT,ECH 93 370 Core Cell Cycle Gene Families AT5G25380 51.4 4.2e-78 288.9
Bda01g00581 BCT,CCT,ECH 90 362 Core Cell Cycle Gene Families AT5G25380 51.3 1.0e-76 284.3
Bda01g01454 . 206 465 Core Cell Cycle Gene Families AT5G25380 51.3 7.0e-73 271.6
Bda01g01446 . 208 425 Core Cell Cycle Gene Families AT5G11300 59.2 8.8e-70 261.2
Bda03g00056 . 369 555 Core Cell Cycle Gene Families AT5G11300 67.4 1.3e-68 257.3
Bda03g00194 BCT,CCT,ECH 93 308 Core Cell Cycle Gene Families AT5G11300 55.6 7.2e-64 241.5
Bda01g00581 BCT,CCT,ECH 90 304 Core Cell Cycle Gene Families AT5G11300 54.9 1.4e-62 237.3
Bda01g01454 . 208 412 Core Cell Cycle Gene Families AT5G11300 55.5 1.2e-61 234.2
Bda08g01363 . 85 301 Core Cell Cycle Gene Families AT5G11300 50.2 1.7e-49 193.7
Bda13g01473 . 416 584 Core Cell Cycle Gene Families AT5G11300 53.8 2.3e-49 193.4
Bda01g00725 . 207 469 Core Cell Cycle Gene Families AT1G15570 62.0 4.7e-93 338.6
Bda03g00056 . 367 617 Core Cell Cycle Gene Families AT1G15570 60.6 1.5e-83 307.0
Bda01g01446 . 206 485 Core Cell Cycle Gene Families AT1G15570 53.6 4.6e-80 295.4
Bda03g00194 BCT,CCT,ECH 93 370 Core Cell Cycle Gene Families AT1G15570 53.2 1.1e-78 290.8
Bda01g00581 BCT,CCT,ECH 90 359 Core Cell Cycle Gene Families AT1G15570 54.1 2.5e-78 289.7
Bda01g01454 . 206 472 Core Cell Cycle Gene Families AT1G15570 51.1 5.4e-73 271.9
Bda03g00056 . 367 617 Core Cell Cycle Gene Families AT1G80370 63.4 2.0e-86 316.6
Bda01g01446 . 206 473 Core Cell Cycle Gene Families AT1G80370 55.2 2.3e-79 293.1
Bda01g00581 BCT,CCT,ECH 90 367 Core Cell Cycle Gene Families AT1G80370 52.2 3.5e-75 279.3
Bda03g00194 BCT,CCT,ECH 93 371 Core Cell Cycle Gene Families AT1G80370 52.3 7.8e-75 278.1
Bda01g01454 . 206 460 Core Cell Cycle Gene Families AT1G80370 52.6 4.7e-72 268.9
Bda01g00581 BCT,CCT,ECH 3 372 Core Cell Cycle Gene Families AT5G43080 57.4 1.2e-112 403.3
Bda03g00194 BCT,CCT,ECH 5 375 Core Cell Cycle Gene Families AT5G43080 57.5 6.7e-111 397.5
Bda01g01446 . 209 488 Core Cell Cycle Gene Families AT5G43080 52.1 3.2e-81 298.9
Bda01g00725 . 208 469 Core Cell Cycle Gene Families AT5G43080 51.5 8.5e-74 274.2
Bda03g00056 . 378 606 Core Cell Cycle Gene Families AT5G43080 55.0 2.4e-68 256.1
Bda01g00581 BCT,CCT,ECH 6 372 Core Cell Cycle Gene Families AT1G47210 55.1 4.0e-114 408.3
Bda03g00194 BCT,CCT,ECH 5 374 Core Cell Cycle Gene Families AT1G47210 56.1 2.9e-112 402.1
Bda01g00725 . 208 467 Core Cell Cycle Gene Families AT1G47210 51.1 1.3e-72 270.4
Bda03g00056 . 378 617 Core Cell Cycle Gene Families AT1G47210 50.6 3.1e-66 249.2
Bda03g00194 BCT,CCT,ECH 93 374 Core Cell Cycle Gene Families AT1G47220 59.6 2.4e-94 342.4
Bda01g00581 BCT,CCT,ECH 90 370 Core Cell Cycle Gene Families AT1G47220 59.1 1.0e-92 337.0
Bda08g01363 . 86 366 Core Cell Cycle Gene Families AT1G47220 50.3 1.8e-73 273.1
Bda01g00725 . 208 467 Core Cell Cycle Gene Families AT1G47220 50.4 7.7e-69 257.7
Bda01g00581 BCT,CCT,ECH 3 372 Core Cell Cycle Gene Families AT1G47230 56.9 2.2e-112 402.5
Bda03g00194 BCT,CCT,ECH 7 377 Core Cell Cycle Gene Families AT1G47230 54.3 3.3e-108 388.7
Bda08g01363 . 1 368 Core Cell Cycle Gene Families AT1G47230 50.5 7.8e-94 340.9
Bda11g00693 . 38 462 Core Cell Cycle Gene Families AT4G37490 54.0 5.0e-108 388.3
Bda03g00583 . 1 249 Core Cell Cycle Gene Families AT4G37490 61.4 2.8e-79 292.7
Bda11g00693 . 23 353 Core Cell Cycle Gene Families AT5G06150 50.9 2.6e-72 269.2
Bda03g00583 . 1 140 Core Cell Cycle Gene Families AT5G06150 66.4 2.1e-45 179.9
Bda11g01814 . 129 296 Core Cell Cycle Gene Families AT5G06150 54.8 1.0e-44 177.6
Bda11g00693 . 42 412 Core Cell Cycle Gene Families AT3G11520 53.2 1.6e-94 343.2
Bda03g00583 . 1 207 Core Cell Cycle Gene Families AT3G11520 65.2 1.1e-71 267.3
Bda11g00971 . 31 255 Core Cell Cycle Gene Families AT3G11520 52.2 1.4e-61 233.8
Bda03g00583 . 1 243 Core Cell Cycle Gene Families AT2G26760 59.3 2.0e-79 293.1
Bda01g01560 CCT,ECH 33 428 Core Cell Cycle Gene Families AT2G17620 55.7 8.4e-116 414.1
Bda11g01814 . 5 394 Core Cell Cycle Gene Families AT2G17620 54.4 1.0e-108 390.6
Bda11g00971 . 12 300 Core Cell Cycle Gene Families AT2G17620 63.1 8.5e-100 360.9
Bda11g01814 . 17 355 Core Cell Cycle Gene Families AT4G35620 57.9 3.0e-96 349.0
Bda01g01560 CCT,ECH 33 385 Core Cell Cycle Gene Families AT4G35620 55.7 5.6e-95 344.7
Bda11g00971 . 18 255 Core Cell Cycle Gene Families AT4G35620 64.7 2.7e-81 299.3
Bda01g01560 CCT,ECH 1 428 Core Cell Cycle Gene Families AT1G20610 63.7 8.1e-143 503.8
Bda11g00971 . 1 298 Core Cell Cycle Gene Families AT1G20610 72.1 4.3e-120 428.3
Bda11g01814 . 24 394 Core Cell Cycle Gene Families AT1G20610 55.1 3.9e-105 378.6
Bda01g01560 CCT,ECH 1 325 Core Cell Cycle Gene Families AT1G76310 65.2 6.7e-108 387.5
Bda11g00971 . 1 195 Core Cell Cycle Gene Families AT1G76310 71.3 5.7e-75 278.1
Bda11g01814 . 1 296 Core Cell Cycle Gene Families AT1G76310 50.9 1.2e-72 270.4
Bda11g00693 . 188 348 Core Cell Cycle Gene Families AT1G76310 52.8 1.3e-39 160.6
Bda14g00493 . 684 907 Core Cell Cycle Gene Families AT1G16330 55.3 5.4e-74 275.8
Bda07g01568 CCT 1 328 Core Cell Cycle Gene Families AT1G70210 57.9 1.0e-95 347.1
Bda01g02234 CCT 1 313 Core Cell Cycle Gene Families AT1G70210 60.4 3.9e-92 335.1
Bda11g01253 . 21 281 Core Cell Cycle Gene Families AT1G70210 62.6 6.7e-84 307.8
Bda14g01328 . 10 223 Core Cell Cycle Gene Families AT2G22490 51.9 5.0e-61 231.9
Bda07g01437 . 7 220 Core Cell Cycle Gene Families AT2G22490 51.4 4.2e-60 228.8
Bda14g01452 BCT,CCT,ECH 1 324 Core Cell Cycle Gene Families AT4G34160 50.4 2.5e-79 292.7
Bda14g01328 . 9 225 Core Cell Cycle Gene Families AT5G65420 61.1 6.2e-72 267.7
Bda07g01437 . 6 222 Core Cell Cycle Gene Families AT5G65420 60.6 6.8e-71 264.2
Bda04g00112 . 62 276 Core Cell Cycle Gene Families AT5G65420 56.4 1.5e-62 236.5
Bda13g01369 BCT 61 265 Core Cell Cycle Gene Families AT5G65420 51.7 4.8e-56 214.9
Bda14g01328 . 4 183 Core Cell Cycle Gene Families AT5G10440 60.4 1.8e-61 232.6
Bda07g01437 . 1 180 Core Cell Cycle Gene Families AT5G10440 59.9 2.0e-60 229.2
Bda04g00112 . 62 241 Core Cell Cycle Gene Families AT5G10440 54.7 1.2e-52 203.4
Bda11g00791 BCT 397 523 Core Cell Cycle Gene Families AT5G10440 57.0 1.2e-36 150.2
Bda01g01682 . 1 271 Core Cell Cycle Gene Families AT5G27620 64.6 5.0e-99 357.8
Bda09g01433 CCT 1 86 Core Cell Cycle Gene Families AT2G27960 91.9 1.1e-43 172.2
Bda09g00193 . 1 82 Core Cell Cycle Gene Families AT2G27960 93.9 2.2e-42 167.9
Bda09g00223 CCT 1 82 Core Cell Cycle Gene Families AT2G27960 92.7 8.2e-42 166.0
Bda09g01433 CCT 1 83 Core Cell Cycle Gene Families AT2G27970 85.5 2.5e-40 161.0
Bda09g00193 . 1 85 Core Cell Cycle Gene Families AT2G27970 89.4 3.3e-40 160.6
Bda09g00223 CCT 1 85 Core Cell Cycle Gene Families AT2G27970 88.2 1.2e-39 158.7
Bda04g00884 . 24 1024 Core Cell Cycle Gene Families AT3G12280 71.6 0.0e+00 1361.3
Bda15g00106 . 1 890 Core Cell Cycle Gene Families AT3G12280 72.0 0.0e+00 1207.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003616 3 2 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01446 Bda_Chr01 FPKM 7.930256 7.214531 14.82193 14.168084 54.948368 56.900715 59.247547 14.567361 18.294476