Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01446 ATGTCGACCCAGAATCGCCGTTCGTCGTTTTCGTCCTCCACGTCGTCTTCATTGGCGAAGAGGCAAGCGCCGTCGGAGAATATGGGGAAGGCTGCGGCGGTTCCGACTCATCTCGCAAAGAAGCGGGCGCCTCTCGGAAACATCACCAATTTGAAGGGTGCTCCCGTCCCTTCTTCTACTATGGCACCGCATACAACAAAAATTTCCAAGGGTAAGAAATGTTCCCCTGCAGGAAATGGCAGCCCAACCTTACAAGGAAGTCAGCTGCCTGCAATGGTTAATGTTAAATCTACTTCAACATTTCCTCTCAAACCTACAACTTTCCCAAAATGTGAAGTGATCATCCCTTCCCCAGCAGTGATCCCACCTCCTAGCAGCATGGATGTTTCTCCAAGTAAATCAGATGGAAGTTCAGTTTCTTTGGATGAGACAATGTCTACTTCTGATTCCTTTAAGAGTCCTGAAGTTGAGTACTTAGACAACAATGATGTACCCACTGTCGATACTATCGAGAGGAAAGCATTAAGCAATCTCTACATTTCAGACCATCAAGTAGACAAAACTGATGGGAATCTTTGCAATAGAGATATGCTTTTTGACCTTCAGAGAGACGGGAAATTTGTGGATATTGATAATAACTACGAAGATCCACAGATGTGTGCTACCATTGCTTGTGATATTTACAAGCATTTGCGCGCATCGGAGGCAAAGAAAAGGCCTTCCACTGATTTCATGGAGAGGATTCAGAAGGATATAAGTGCTAACATGCGTGCCATTTTAATCGATTGGCTTGTGGAGGTAGCTGAAGAATACAGATTAATCCCCGATACGCTCTATTTGACTGTAAATTACATTGATCGATATCTCTCTGGTAATGCAATGGACAGACAAAGATTACAGCTGCTTGGGGTTGCCTCCATGATGATTGCTTCGAAGTATGAGGAGATATGTGCGCCACAAGTGGAAGAATTTTGTTATATTACGGACAATACATATTTTAAGGAAGAGGTATTGCAAATGGAATCATCTATGTTGAACTACTTGAAGTTTGAAATGACTGCACCAACAACTAAGTGTTTTCTAAGGCGATTTGTTCGTGTTGCTCAAGGGATAGATGAGGTTCCATCAATGCAAATAGAATGCTTAGCTAACTACCTTGCCGAGCTGTCGCTTATCGAATACAGCATGCTCGTTTATTCTCCGTCACTCATTGCCGCTTCAGCCATTTTCTTGGCGAAGTTCATCCTCTGTCCGACTAAGAGACCATGGAACTCCATATTGCAGCATTACACTCTTTACCAGCCTTGTGATCTGAGAGACTGCGTAAAGAACTTGCATAGACTGTGTTGTCGCACTCCAACTTCTAGCCTACCAGCCATTAGAGAGAAATACAGCCAACACAAGTACAAACAGGTGGCTAGAAAACACTGTCCTCCAGTCTTACCTTCTGAGTTTTTCTACAATGAAATCCAA 1473 43.52 MSTQNRRSSFSSSTSSSLAKRQAPSENMGKAAAVPTHLAKKRAPLGNITNLKGAPVPSSTMAPHTTKISKGKKCSPAGNGSPTLQGSQLPAMVNVKSTSTFPLKPTTFPKCEVIIPSPAVIPPPSSMDVSPSKSDGSSVSLDETMSTSDSFKSPEVEYLDNNDVPTVDTIERKALSNLYISDHQVDKTDGNLCNRDMLFDLQRDGKFVDIDNNYEDPQMCATIACDIYKHLRASEAKKRPSTDFMERIQKDISANMRAILIDWLVEVAEEYRLIPDTLYLTVNYIDRYLSGNAMDRQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSMLNYLKFEMTAPTTKCFLRRFVRVAQGIDEVPSMQIECLANYLAELSLIEYSMLVYSPSLIAASAIFLAKFILCPTKRPWNSILQHYTLYQPCDLRDCVKNLHRLCCRTPTSSLPAIREKYSQHKYKQVARKHCPPVLPSEFFYNEIQ 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50385131 50388178 + Bda032953 Bda01g01446 1446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01446 491 Gene3D - 226 473 - -
Bda01g01446 491 CDD CYCLIN 256 345 IPR013763 -
Bda01g01446 491 PANTHER CYCLIN-A1-1 30 488 - -
Bda01g01446 491 SMART cyclin_7 359 447 IPR013763 -
Bda01g01446 491 SMART cyclin_7 262 346 IPR013763 -
Bda01g01446 491 PANTHER CYCLINS 30 488 IPR039361 -
Bda01g01446 491 Gene3D - 240 353 - -
Bda01g01446 491 MobiDBLite consensus disorder prediction 127 153 - -
Bda01g01446 491 MobiDBLite consensus disorder prediction 1 23 - -
Bda01g01446 491 MobiDBLite consensus disorder prediction 76 90 - -
Bda01g01446 491 MobiDBLite consensus disorder prediction 52 66 - -
Bda01g01446 491 CDD CYCLIN 353 446 IPR013763 -
Bda01g01446 491 MobiDBLite consensus disorder prediction 119 153 - -
Bda01g01446 491 MobiDBLite consensus disorder prediction 1 90 - -
Bda01g01446 491 PIRSF Cyclin_A_B_D_E 1 487 IPR039361 -
Bda01g01446 491 SUPERFAMILY Cyclin-like 355 479 IPR036915 -
Bda01g01446 491 Pfam Cyclin, C-terminal domain 355 475 IPR004367 -
Bda01g01446 491 SUPERFAMILY Cyclin-like 215 352 IPR036915 -
Bda01g01446 491 SMART Cyclin_C_2 355 479 IPR004367 -
Bda01g01446 491 Pfam Cyclin, N-terminal domain 226 352 IPR006671 -
Bda01g01446 491 ProSitePatterns Cyclins signature. 257 288 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00581 Bda-Chr1:32830373 Bda01g01446 Bda-Chr1:50385131 1.65E-102 dispersed
Bda01g00725 Bda-Chr1:34532308 Bda01g01446 Bda-Chr1:50385131 6.92E-103 dispersed
Bda01g01446 Bda-Chr1:50385131 Bda13g01473 Bda-Chr13:37627034 2.62E-17 dispersed
Bda11g00693 Bda-Chr11:6914682 Bda01g01446 Bda-Chr1:50385131 9.10E-52 dispersed
Bda01g01446 Bda-Chr1:50385131 Bda01g01454 Bda-Chr1:50454887 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01446 K06627 - qsu:112028095 685.641