Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01454 ATGTCGACCCAGAATCGCCGTTCGTCGTTTTCGTCCTCCACGTCGTCTTCATTGGCGAAGAGGCAAGCGCCGTCGGAGAATATGGGGAAGGCTGCGGCGGTTCCGACTCATCTCGCAAAGAAGCGGGCGCCTCTCGGAAACATCACCAATTTGAAGGGTGCTCCCGTCCCTTCTTCTACTATGGCACCGCATACAACAAAAATTTCCAAGGGTAAAAAATGTTCCCCTGCAGGAAATGGCAGCCCAACCTTACAAGGAAGTCAGCTGCCTGCAATGGTTAATGTTAAATCTACTTCAACATTTCCTCTCAAACCTACAACTTTCCCAAAATGTGAAGTGATCAGCCCTTCCCCAGCAGTGATCCCACCTCCTAGCAGCATGGATGTTTCTCCAAGTAAATCAGATGGAAGTTCAGTTTCTTTGGATGAGACAATGTCTACTTCTGATTCCTTTAAGAGTCCTGAAGTTGAGTACTTAGACAACAATGATGTACCCACTGTCGATACTATCGAGAGGAAAGCATTAAGCAATCTCTACATTTCAGACCATCAAGTAGACAAAACTGATGGGAATCTTTGCAATAGAGATATGCTTTTTGACCTTCAGAGAGACGGGAAATTTGTGGATATTGATAATAACTACGAAGATCCACAGATGTGTGCTACCATTGCTTGTGATATTTACAAGCATTTGCGCGCATCGGAGGCAAAGAAAAGGCCTTCCACTGATTTCATGGAGAGGATTCAGAAGGATATAAGTGCTAACATGCGTGCCATTTTAATCGATTGGCTTGTGGAGGTAGCTGAAGAATACAGATTAATCCCCGATACGCTCTATTTGACTGTAAATTACATTGATCGATATCTCTCTGGTAATGCAATGGACATACAAAGATTACAGCTGCTTGGGGTTGCCTCCATGATGATTGCTTCGAAGTATGAGGAGATATGTGCGCCACAAGTGGAAGAATTTTGTTATATTACGGACAATACATATTTTAAGGAAGAGGTATTGCAAATGGAATCATCTATGTTGAACTACTTGAAGCGATTTGTTCGTGTTGCTCAAGGGATAGATGAGGTTCCATCAATGCAAATAGAATGCTTAGCTAACTACCTTGCCGAGCTGTCGCTTATCGAATACAGCATGCTCGTTTATTCTCCGTCACTCATCGCCGCTTCAGCCATTTTCTTGGCGAAGTTCATCCTCTGTCCGACTAAGAGACCATGGAACTCCATATTGCAGCATTACACTCTTTACCAGCCTTGTGATCTGAGAGACTGCGTAAAGAACTTGCATAGACTGTGCTGTAGCACTCCAACTTCTAGCCTACCAGCCATTAGAGAGAAATACAGCCAACACAAGTACAAACAGGTGGCTAGAAAACACTGTCCTCCAGTCTTACCTTCTGAGTTTTTCTACAATGAAATCCAATAG 1437 43.7 MSTQNRRSSFSSSTSSSLAKRQAPSENMGKAAAVPTHLAKKRAPLGNITNLKGAPVPSSTMAPHTTKISKGKKCSPAGNGSPTLQGSQLPAMVNVKSTSTFPLKPTTFPKCEVISPSPAVIPPPSSMDVSPSKSDGSSVSLDETMSTSDSFKSPEVEYLDNNDVPTVDTIERKALSNLYISDHQVDKTDGNLCNRDMLFDLQRDGKFVDIDNNYEDPQMCATIACDIYKHLRASEAKKRPSTDFMERIQKDISANMRAILIDWLVEVAEEYRLIPDTLYLTVNYIDRYLSGNAMDIQRLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSMLNYLKRFVRVAQGIDEVPSMQIECLANYLAELSLIEYSMLVYSPSLIAASAIFLAKFILCPTKRPWNSILQHYTLYQPCDLRDCVKNLHRLCCSTPTSSLPAIREKYSQHKYKQVARKHCPPVLPSEFFYNEIQ 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50454887 50457935 + Bda003700.1 Bda01g01454 1454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01454 478 PIRSF Cyclin_A_B_D_E 1 474 IPR039361 -
Bda01g01454 478 SUPERFAMILY Cyclin-like 215 349 IPR036915 -
Bda01g01454 478 CDD CYCLIN 256 345 IPR013763 -
Bda01g01454 478 PANTHER CYCLIN-A1-1 30 475 - -
Bda01g01454 478 SMART cyclin_7 349 434 IPR013763 -
Bda01g01454 478 SMART cyclin_7 262 346 IPR013763 -
Bda01g01454 478 MobiDBLite consensus disorder prediction 127 153 - -
Bda01g01454 478 MobiDBLite consensus disorder prediction 1 23 - -
Bda01g01454 478 MobiDBLite consensus disorder prediction 76 90 - -
Bda01g01454 478 MobiDBLite consensus disorder prediction 52 66 - -
Bda01g01454 478 CDD CYCLIN 345 433 IPR013763 -
Bda01g01454 478 PANTHER CYCLINS 30 475 IPR039361 -
Bda01g01454 478 Gene3D - 226 460 - -
Bda01g01454 478 SMART Cyclin_C_2 342 466 IPR004367 -
Bda01g01454 478 MobiDBLite consensus disorder prediction 1 90 - -
Bda01g01454 478 SUPERFAMILY Cyclin-like 345 466 IPR036915 -
Bda01g01454 478 Gene3D - 240 349 - -
Bda01g01454 478 Pfam Cyclin, N-terminal domain 226 349 IPR006671 -
Bda01g01454 478 MobiDBLite consensus disorder prediction 114 153 - -
Bda01g01454 478 ProSitePatterns Cyclins signature. 257 288 IPR006671 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01454 Bda-Chr1:50454887 Bda03g00194 Bda-Chr3:1558109 9.47E-90 dispersed
Bda01g01446 Bda-Chr1:50385131 Bda01g01454 Bda-Chr1:50454887 0 proximal
Bda01g01454 Bda-Chr1:50454887 Bda13g01473 Bda-Chr13:37627034 5.26E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01454 K06627 - qsu:112028095 645.195