Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01456 TCTGAAATGAGCTTCCTAAAGCCTTCTGTATTTTACGAGTTCCTACCATCGCAAAGGAGGATGCCATGCCAAAATTGGGGGTTCCTCAGATGGCCGGGTTTTGATGGGTTCCTTAGGCTTTTGGTGGTTTTTCTATTGTGGTCTATGTTCTCAGAGATTAAGTTCATACCTTCCTCTTCTATGTACCCTACTCTTCACGTTGGAGATCGTATCATTGTAGAAAGGGCCTCGTATTTCTTCAGAAGTCCTGCTGTACGTGACATCGTGACATTCAGAGATCCAACATGGCAACCTGGAGATGGGGAAAGAAATGTTTTCATTAAGCGAATTGTTGCAAAATCAGGAGACTTGGTACAGATTCAACATGGGAAGCTTTTTGTTAATGGAATTGCTCAGAAGGAGGATTTTATTGCAGGGGGGCCATCATATGTAACTATTTCAACTCTGGTGCCTAAAGGTCATGTTTACGTGTTGGGCGACAACCGAAATAACAGCTACGATTCCCATATTTGGGGACCCCTTCCGGTCAAAAACATCATCGGCCGATATGTAACGCGTTTTTATAGACCCACGAACCACTAA 582 43.64 SEMSFLKPSVFYEFLPSQRRMPCQNWGFLRWPGFDGFLRLLVVFLLWSMFSEIKFIPSSSMYPTLHVGDRIIVERASYFFRSPAVRDIVTFRDPTWQPGDGERNVFIKRIVAKSGDLVQIQHGKLFVNGIAQKEDFIAGGPSYVTISTLVPKGHVYVLGDNRNNSYDSHIWGPLPVKNIIGRYVTRFYRPTNH 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50468406 50470770 + Bda003702.1 Bda01g01456 1456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01456 193 PANTHER SIGNAL PEPTIDASE I 3 192 IPR000223 GO:0006508|GO:0008236|GO:0016020
Bda01g01456 193 SUPERFAMILY LexA/Signal peptidase 50 189 IPR036286 -
Bda01g01456 193 Gene3D Umud Fragment, subunit A 58 189 - -
Bda01g01456 193 TIGRFAM sigpep_I_bact: signal peptidase I 39 188 IPR000223 GO:0006508|GO:0008236|GO:0016020
Bda01g01456 193 ProSitePatterns Signal peptidases I serine active site. 58 65 IPR019756 GO:0004252|GO:0016021
Bda01g01456 193 CDD S26_SPase_I 52 182 IPR019533 GO:0004252|GO:0006465
Bda01g01456 193 PANTHER CHLOROPLAST PROCESSING PEPTIDASE-LIKE 3 192 - -
Bda01g01456 193 PRINTS Bacterial leader peptidase 1 (S26A) family signature 49 65 IPR000223 GO:0006508|GO:0008236|GO:0016020
Bda01g01456 193 PRINTS Bacterial leader peptidase 1 (S26A) family signature 106 118 IPR000223 GO:0006508|GO:0008236|GO:0016020
Bda01g01456 193 PRINTS Bacterial leader peptidase 1 (S26A) family signature 150 169 IPR000223 GO:0006508|GO:0008236|GO:0016020
Bda01g01456 193 ProSitePatterns Signal peptidases I signature 3. 155 168 IPR019758 GO:0004252|GO:0016021
Bda01g01456 193 Pfam Signal peptidase, peptidase S26 38 187 IPR019533 GO:0004252|GO:0006465
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01456 K03100 lepB; signal peptidase I [EC:3.4.21.89] - zju:107421032 299.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01456 Bda-Chr1:50468406 Bda08g01304 Bda-Chr8:52784394 5.05E-53 dispersed
Bda01g01456 Bda-Chr1:50468406 Bda08g01315 Bda-Chr8:52958975 6.60E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g227 . . . . . . . . Cmo04g02501 Cmo15g00666 . . . . Sed01g3097 . . Bhi04g01876 Tan11g1248 Cmetu03g2013 . Hepe02g2219 . Lcy10g1247 Cla08g00618 Cam08g1032 Cec08g0621 Cco08g0733 Clacu08g0742 . Cre08g0550 . . . Cone20ag0430 . . . . . . . Bda01g01456 Bpe02g01653 . Bma01g00801 . . . . . . Car04g02307 Car15g00606 Cpe01g02069 . . . . . . . . . . . . . . . Lsi08g00458 . Chy03g00760 .
Vvi18g833 . . . . . . . . . Cmo12g00452 . Cma09g00203 . Car12g00481 Sed11g0987 Cpe06g00138 Cpe07g00455 Bhi04g00299 Tan02g1908 Cmetu03g1436 . Hepe10g0694 . Lcy13g2022 Cla08g01531 Cam08g2024 Cec08g1598 Cco08g1734 Clacu08g1712 . Cre08g1493 Cone4ag1550 Cone7ag1402 . . Lsi04g01599 Csa04g02369 . Cme03g01996 . . . Bda01g01456 . . . . Sed01g2628 . Cmo09g00197 Cma12g00511 . . Car09g00171 . . Bhi09g03385 Tan01g4845 Cmetu07g1797 . Hepe01g1727 . . Cla05g01999 Cam05g2150 Cec05g2167 Cco05g2215 Clacu05g2142 Cmu05g2012 Cre05g2138 Lsi08g01433 Csa02g02007 Chy07g00098 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011233 1 1 0 1 1 1 2 1 1 1 1 1 0 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01456 Bda_Chr01 FPKM 20.314857 22.996784 32.362217 32.794613 6.345606 5.899292 7.493778 25.030527 21.713615