Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01467 ATGCTGGAGATGGTGGAAATGGAACAGAGGACATGGGCTGCTCTTTCTAACAAATGTCTAATTTTTGGATACTGTGGGAACTTTGGAATTTGTAGTTACAGTGAAAGGGACGCCATTTGTGTATGCCCAACCCAGAATTTCTCGCCGATTGATCTGAATGATATGAGAAAAGGCTGTAAAAGGAAGGTGGAGCTTGAGAATTGTCCTGGCAATGGCACCACAGCTGCAGAATTAGAGAACACACAATTTTTGACGTACCCGCCGGAGACTCAGCAGATGGTCTATGCGGGTAGATCGGCTTGCAGGTCGAATTGTCTGACTAGTCCTGCTTGTGTTGCTTCGACTTCTCTATCGGACGGAAGCGGGCAGTGTTCTCAAAAGACCACAAATTTTGTTAGCGGCTATCAGAGCCCCACTTTGCCTAGCTCGTCCTACGTCAAGGTTTGCAATCCAGTCGTTCCAAACCCATCAACGGCGTCGGACGACCGAGGGGAGAAAGGCGGGTTGGCTGCTTGGGTGGTGGTCATTGTAGTTCTGGGCACTGTTTTGGTTTTGATTGTTTGTGAGGGGAGTCTATGGTGGTGGTGCTGTAGAAATAACCCCAAATTTGGGGCAGTTTCCTCACAGTATGCACTTCTTGAGTATGCATCTGGGGCCCCAATCCAGTTTTCTTATAAAGAACTCCATAGATTGACAAAGGGTTTCAAGGAAAAGCTCGGAGTAGGAGGGTTCGGAGCAGTTTATCGAGGGATTCTTTCTAATCGGACTGTTGTTGCTGTCAAACAACTCGAGGGAATTGAGCAAGGGGAGAAGCAGTTCAGAATGGAGGTGGCTACTATCAGTAGTACCCACCATTTGAACTTAGTGAGGTTGATTGGCTTCTGCTCGGAGGGAAGGCGTCGGCTATTAGTCTATGAGTTCATGAAAAACGGTTCTCTCGATAGTTTTCTCTTCAAGACCGAGGAGAATTCTAGAAAATTCCTCAACTGGGTGTATAGATTCAACATCGCCATTGGCACGGCCAGAGGCATTACTTATCTTCACGAAGAATGCCGAGATTGCATCATTCATTGCGATATAAAACCAGAAAACATTCTCGTCGACGATAATTTCGACGCGAAAGTTTCTGATTTCGGCCTTGCTAAGCTCATAAACCCGAAGGATCACAGATATAAAACTCTCACCAGTGTGAGAGGAACTCGGGGCTATTTGGGTCCGGAATGGTTGGCGAATTTGCCATTAACGTCCAAATCCGACGTTTACAGCTACGGAATGGTTCTGCTAGAGATCGTGAGCGGGAGAAGAAATTACGACATATCGGCTGAAACGAACCATAAAAAATTTTCCATATGGTCCTACGAAGAGTTTGAAAAGGGTAATATCATGGCGATCATAGACAAAAGACTGGCCGAAGAAGAGATAAACATGGAACAAGTTTTGAGGGCCATTAAAGTGAGCTTTTGGTGCATTCAAGAGCAGCCATCTCAGCGGCCTAACATGGGGAAGGTGGTCCAAATGCTAGAAGGGATTAGAGAAATTGAGAAGCCTCCTGCCCCAAATGCAGCACCAGAGTTGTCGATGACCAGTGCTTTCTCCATGTCAGCACCCTCTGGCCCCACCCTTTCTTCGTCGTCGTCAGCACAAGTGGGTGGTATGCGAGATCCTCCCTTGGGAAGAGACTTCCAATCTCTTCTGAAAAACGATAGCTGA 1710 46.84 MLEMVEMEQRTWAALSNKCLIFGYCGNFGICSYSERDAICVCPTQNFSPIDLNDMRKGCKRKVELENCPGNGTTAAELENTQFLTYPPETQQMVYAGRSACRSNCLTSPACVASTSLSDGSGQCSQKTTNFVSGYQSPTLPSSSYVKVCNPVVPNPSTASDDRGEKGGLAAWVVVIVVLGTVLVLIVCEGSLWWWCCRNNPKFGAVSSQYALLEYASGAPIQFSYKELHRLTKGFKEKLGVGGFGAVYRGILSNRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRRRLLVYEFMKNGSLDSFLFKTEENSRKFLNWVYRFNIAIGTARGITYLHEECRDCIIHCDIKPENILVDDNFDAKVSDFGLAKLINPKDHRYKTLTSVRGTRGYLGPEWLANLPLTSKSDVYSYGMVLLEIVSGRRNYDISAETNHKKFSIWSYEEFEKGNIMAIIDKRLAEEEINMEQVLRAIKVSFWCIQEQPSQRPNMGKVVQMLEGIREIEKPPAPNAAPELSMTSAFSMSAPSGPTLSSSSSAQVGGMRDPPLGRDFQSLLKNDS 569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50584800 50586509 - Bda003714.1 Bda01g01467 1467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01467 569 PANTHER G-TYPE LECTIN S-RECEPTOR SERINE/THREONINE-PROTEIN KINASE 10 551 - -
Bda01g01467 569 Pfam Protein kinase domain 236 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01467 569 Gene3D Transferase(Phosphotransferase) domain 1 308 523 - -
Bda01g01467 569 SUPERFAMILY Protein kinase-like (PK-like) 215 508 IPR011009 -
Bda01g01467 569 ProSitePatterns Protein kinases ATP-binding region signature. 239 261 IPR017441 GO:0005524
Bda01g01467 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
Bda01g01467 569 MobiDBLite consensus disorder prediction 525 550 - -
Bda01g01467 569 Gene3D Phosphorylase Kinase; domain 1 204 307 - -
Bda01g01467 569 SMART serkin_6 233 507 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01467 569 PANTHER OS07G0415500 PROTEIN 10 551 - -
Bda01g01467 569 ProSiteProfiles Protein kinase domain profile. 233 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01467 569 CDD STKc_IRAK 239 510 - -
Bda01g01467 569 MobiDBLite consensus disorder prediction 516 569 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01467 - - - cpap:110813280 826.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01467 Bda-Chr1:50584800 Bda15g00939 Bda-Chr15:17293773 1.83E-122 dispersed
Bda01g01467 Bda-Chr1:50584800 Bda01g01002 Bda-Chr1:43605480 1.17E-109 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1290 . . . . . . . . . . . . . . . . Cpe13g00715 . . . . . . . . . . . . . . . . . . . . . Cme03g01093 . . . Bda01g01467 . . . . . . . . . . Car15g00518 . . . . . . . . . . . . . . . . Lsi08g00607 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010545 1 1 0 1 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 2 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69452 PF00069 Pkinase 1.10E-48 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01467 Bda_Chr01 FPKM 12.955392 11.26263 15.506664 15.258544 7.503974 7.119116 7.192902 23.287102 24.04771