Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01471 ATGGCGGATGTGATGCTGATGGGGGAGATTGAAGCCACCGCCGCTCAGCTCGGAATCGATCTCTCCCAATTCGATCTCGAGTCCATTCGCCTTCCTCCAGGCGAAGACTTTGGCATCATTAGTGATGATGAGGATGTTTTTCAAGAGGAGAATCTGGAGTTTGATACTGGATTTGGAAACATTATTGTTGTGGATAATCTTCCTGTTGTTCCCCGGGAAAAATTTGAGAAGCTTGAAGGTGTAATTCGTAAGATATACGGTCAAATTGGAATAATAAAGGAGGAGGGTCTTTGGATGCCTGTTGATCCTGAGACGCACAAAACGGAAGCTGAGCTTGCTAAGGAGAAAACAAATGGGTACAAACTGGACAGAGCACACATATTTACTGTTAGCATGTTTGATGATTTCGATAAGTTTATGAAGGTTCCTGATGAGTGGGCCGCTCCTGAAAGTGTTTCATACTCTCCGGGGGAGAATCTTCAAAGTTGGCTTACAGATGAGAAAGCTCGCGATCAGTTTGTGATTCGCGCTAGTAATGATACTGAAGTTTTATGGAATGATGCCAGACATATGAAGCCTGACCCTGTGTACAAGCGTACATTATGGACTGAAGGTTTTATCCAGTGGTCATCTCTTGGGACTTACTTGGCAACAGTTCACCGCCAAGGTGCTGCTGTTTGGGGTGGTGCCAGTACCTTTAATCGTTTAATGCGTTATGCTCATCCTCAGGTTAAGCTGATTGATTTTTCACCCGGTGAGAAATATTTAGTAACTTACAGCAGCCATGAACCAAGCAATCCTCGAGATGCTAATAGGATTGTGATCAACATATTTGATGTTAGAACTGGTAAAGTAATGCGGGATTTCAAGGGAAGTCCCGATGAATTTGCTGTTGGAGGAACAGGAGCTGTTGCAGGAGTATCTTGGCCAGTTTTTAGATGGGGTGGAAAGAATGATAAATATTTTGCCAGGATTGGAAAAAATTTAATCTCTGTTTATGAAACGGAAACTTTTTCTCTGGTTGACAAGAGGTCTTTGAAGGTTGACAATGTCGTGGATTTTAGTTGGTCTCCAACTGATCCAATTATTGCAATTTTTGTTCCCGAGCTAGGTGGCGGCAACCAACCTGCTAGGGTTAGCCTTGTCCAAATTCCTAGCAAAGAAGAAATCAGGCAGAAAAATCTTTTCAGTGTTAGTGATTGCAAAATGTATTGGCAAAGCAGTGGTGATTATCTAGCTGCTAAGGTTGATCGTTATACAAAGACAAAAAAGAGTACATACACTGGGTTTGAGCTTTTCCGCATCAAAGAACGTGATATTCCAATTGAGGTTTTGGAACTTGAAAACAAGAATGATAAAATTATTGCTTTTGCCTGGGAGCCCAAGGGCCACAGATTTGCTGTTATTCATGGTGATAACCCCAGGCCAGACATAAGTTTTTATTCAATGCGATCTGCTCATAATACGGGTCGAGTTTCGAAGCTTACCACTCTCAAAGGGAAACAAGCAAATACTCTTTTCTGGTCACCAGCTGGGCGCTTTATTATTCTTGCTGGACTGAAGGGTTTCAACGGACAGCTTGAGTTTTATAATGTTGATGAGCTTGAAACCATGGCTACAGCTGAGCATTTCATGGCGACAGACATTGAATGGGATCCCACTGGAAGGTGGTATGTTGCAACTTCAGTGACTTCTGTTCATGAGATGGAAAATGGTTTCAACATATGGTCTTTTAATGGGAAGCTACTGTATAGAATATTGAAGGATCATTTCTATCAGTTCTTGTGGCGACCAAGGCCACCTTCGCTGTTATCACCAGAAAAAGAAGAGGAGATAGCTAAAAATTTGAAGAAGTACAGTAAGAAGTATGAGGCAGAAGATCAAGACGTGTCGATGCTATTAAGTGAGCAGGATCGGGAGAAGCGAAAGACGCTGAAGGATGAATGGGATAAGTGGGTGAGTGAGTGGAAGAGGCTGCACGAAGAAGAAAAACTGTGGAGGCAGAAGCTAAGAGATGGTGAAGCGAGTGATGAAGAAGAAGAATATGAAGCCAAAGAGGTTGAAGTTGAGGAGATTCTTGATATTGTGGAAGAGGTTGTTGATCTTGAAGAGTAA 2115 42.41 MADVMLMGEIEATAAQLGIDLSQFDLESIRLPPGEDFGIISDDEDVFQEENLEFDTGFGNIIVVDNLPVVPREKFEKLEGVIRKIYGQIGIIKEEGLWMPVDPETHKTEAELAKEKTNGYKLDRAHIFTVSMFDDFDKFMKVPDEWAAPESVSYSPGENLQSWLTDEKARDQFVIRASNDTEVLWNDARHMKPDPVYKRTLWTEGFIQWSSLGTYLATVHRQGAAVWGGASTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRIVINIFDVRTGKVMRDFKGSPDEFAVGGTGAVAGVSWPVFRWGGKNDKYFARIGKNLISVYETETFSLVDKRSLKVDNVVDFSWSPTDPIIAIFVPELGGGNQPARVSLVQIPSKEEIRQKNLFSVSDCKMYWQSSGDYLAAKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSAHNTGRVSKLTTLKGKQANTLFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRWYVATSVTSVHEMENGFNIWSFNGKLLYRILKDHFYQFLWRPRPPSLLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRKTLKDEWDKWVSEWKRLHEEEKLWRQKLRDGEASDEEEEYEAKEVEVEEILDIVEEVVDLEE 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50635995 50640097 - Bda003722.1 Bda01g01471 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01471 704 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 701 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bda01g01471 704 PANTHER BNACNNG51870D PROTEIN 6 701 - -
Bda01g01471 704 Coils Coil 675 695 - -
Bda01g01471 704 Gene3D - 148 369 IPR015943 GO:0005515
Bda01g01471 704 SUPERFAMILY DPP6 N-terminal domain-like 207 581 - -
Bda01g01471 704 CDD RRM_eIF3B 59 130 IPR034363 -
Bda01g01471 704 Pfam Eukaryotic translation initiation factor eIF2A 393 594 IPR013979 -
Bda01g01471 704 Gene3D - 434 652 IPR011042 -
Bda01g01471 704 PIRSF Transl_init_eIF3b 6 702 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Bda01g01471 704 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 701 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01019 Bda-Chr1:43754752 Bda01g01471 Bda-Chr1:50635995 0 dispersed
Bda01g01471 Bda-Chr1:50635995 Bda13g00541 Bda-Chr13:6418178 3.72E-22 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01471 K03253 - csv:101213144 1224.15