Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01485 ATGATCACAACTAACTCACTTCTCTGCTTCTTCCTTCTCTTCTTCCTCCCTCTCATCACTCCTTATCATTCACCCACCTGCAATAAATCATGCGCCCCCGATCAACCTCTCCATGACTTTCCTTACCCGGTCGGCTTCTCCTCCGGGTGCGAAATCCGCCTCAACTGCACCGATAAAGGTACCCCCATCATCGGCGATTTCCCTGTCCAATCGGTGGCCTCTGAGATCATTAAAGTCACCATCGAAGCTGAATGCTTTCGACCTTTTCTGAGGATCAGTCAGCTATTCGGCACTAAGTTCGCTCCGACGAGACGAAACGCTTTTTTGATGCAAAATTGCTCCTCCTCCGATTTAACTTGTATGTTACCGGAGACCATGGTGAGGACCCGATTCGAGACGCCGAATTGCAGTCTAAGCAACGGGAACGTAATCTGTTATTCACAGAACTCATCCGACGGCTTTATGGATTTCAGAAGCGTCTCCGGAACCCGATGCGAATTTATATTGTCATCAATATCGGCAGAATCCTTAAACGGAACAACGGGAGTGTCGTTGGAAGTTCAGACGGCGGAGCTTGGGTGGTGGGTGCAAGGAAACTGCCGCTGCTCAAGCCATGCTAATTGTACTACGCTTCTCTCCCCCACAGACGGCAGGCCAGCGTATCGGTGTAAATGTAACTATGGGTATGTCGGGGACGGGTACTCCGCCGGAACAGGTTGCAAAAAAGATTCCTCCAACTGCTACCTGACCAGGTACATCAGCAGCCACTGTGGAGGCACAGCCAAGATCATCGTCCTCGTCGGAGGTATAGCTGGTGGAGCTCTTTTAATGGCGGCTGTTGGCTTAATTTACTGTTTTGTACGCCGAAGCTTTAAATCAAAAGCCAGACGAATAGCAAAACGCCGCCTTTCAGAGGCGACAGGCGCTTGCACTATCCCCATTTACGCATACAAAGAAATCGAAAGAGCCACTGATTTCTTCTCTGACAAATACCGCCTCGGCACCGGAGCTTACGGAACAGTCTACGCCGCTAAATTACCCCGCTCCGACGAATGGGTCGCCGTCAAAAGATTAAAAAACAGAGACACTGATAGCATTGAGCAAGTAATGAACGAAGTCAAGCTTCTTTGTTCAGTCAAGGTTGCCGATTTCGGACTTTCTCGACTAGGATTGACAGAATCGTCGCACATATCGACGGCCCCACAGGGTACTCCGGGCTATCTCGATCCTCAATATCATCAAAACTTCCATCTTTCCGATAAAAGCGACGTTTACAGCTTCGGCGTTGTTCTGCTTGAGATAATAACAGGGTTGAAAGCTGTAGACTTTTCCCGACCGAAAGATGAAGTAAATCTTGCTTCTCTAGGAACAGAGAGAATCAGAAATGGGCGACTAGAGGAGATCATAGATCCGTTTTTGGATCAAAACCGGGAGGGGTGGACGATTTTATCTGTGCAAAAGGTGGCAGAGCTGGCATTTAGATGTCTGGCATTTGATCGGGACGTGAGACCTTCCATGACCGACGTAGCAGCGGAATTGGAGCAGATCGGGCTGATCCAGTCCCGTACTTCATCGCTAGTGTCTTCTTCTTCTTCTTCTTCATCAAACCCGACTGAGAAGATATTAAGCAAACAGGTAGATGGTGATGATTTACGAGTTTCAGTTCAGAAGCCATGGCCTAAGTAG 1686 48.7 MITTNSLLCFFLLFFLPLITPYHSPTCNKSCAPDQPLHDFPYPVGFSSGCEIRLNCTDKGTPIIGDFPVQSVASEIIKVTIEAECFRPFLRISQLFGTKFAPTRRNAFLMQNCSSSDLTCMLPETMVRTRFETPNCSLSNGNVICYSQNSSDGFMDFRSVSGTRCEFILSSISAESLNGTTGVSLEVQTAELGWWVQGNCRCSSHANCTTLLSPTDGRPAYRCKCNYGYVGDGYSAGTGCKKDSSNCYLTRYISSHCGGTAKIIVLVGGIAGGALLMAAVGLIYCFVRRSFKSKARRIAKRRLSEATGACTIPIYAYKEIERATDFFSDKYRLGTGAYGTVYAAKLPRSDEWVAVKRLKNRDTDSIEQVMNEVKLLCSVKVADFGLSRLGLTESSHISTAPQGTPGYLDPQYHQNFHLSDKSDVYSFGVVLLEIITGLKAVDFSRPKDEVNLASLGTERIRNGRLEEIIDPFLDQNREGWTILSVQKVAELAFRCLAFDRDVRPSMTDVAAELEQIGLIQSRTSSLVSSSSSSSSNPTEKILSKQVDGDDLRVSVQKPWPK 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50750990 50753242 + Bda003740.2 Bda01g01485 1485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01485 561 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 25 379 - -
Bda01g01485 561 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 379 536 - -
Bda01g01485 561 ProSitePatterns Protein kinases ATP-binding region signature. 333 356 IPR017441 GO:0005524
Bda01g01485 561 SUPERFAMILY Protein kinase-like (PK-like) 313 529 IPR011009 -
Bda01g01485 561 Gene3D Transferase(Phosphotransferase) domain 1 381 547 - -
Bda01g01485 561 Pfam Protein kinase domain 379 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01485 561 Gene3D Phosphorylase Kinase; domain 1 313 380 - -
Bda01g01485 561 MobiDBLite consensus disorder prediction 523 561 - -
Bda01g01485 561 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 379 IPR045274 GO:0007166
Bda01g01485 561 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 379 536 IPR045274 GO:0007166
Bda01g01485 561 ProSiteProfiles Protein kinase domain profile. 146 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01485 561 MobiDBLite consensus disorder prediction 523 542 - -
Bda01g01485 561 Gene3D Laminin 199 235 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01485 - - - jre:108980934 402.519
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01485 Bda-Chr1:50750990 Bda04g00307 Bda-Chr4:46531151 2.20E-63 dispersed
Bda01g01485 Bda-Chr1:50750990 Bda07g01085 Bda-Chr7:12751546 1.23E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69453 PF00069 Pkinase 6.90E-10 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01485 Bda_Chr01 FPKM 2.243168 3.120206 9.640179 10.858777 48.844467 48.246807 48.817474 10.249667 10.264583