Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01492 ATGTCTGATCACGAAAATGGCTCGCCTGAAGATTTTGCCTGGTCTGAGCTGAAACTTCCACAGGAATTATTCAGTGACACTGTACGTGATGTGCATGCGAGAATTGAAGCTCAATGGGATGACCTGCAGCGCTCGGCATGCCAAACGGCAGCCGGAAGAGCCCTCTGGAATCACGTAATCAATGACCCCCTTGCAGGCTTGCTGGCGGGAGAGACATACCTGAGAAGAATTTATGAGAAGATAAAGAAGGATCGTCTAAACAATGCAAGAGAAATCTCAGGAGTGATTCTTGCTGTTCGCACACTCTGGTTTGATTCTAAACTTGAAGATGCACTCAATTCCTTCAGTGGCAAGGACTCACAGGTTGTTCTCCTCGGTGCAGGGATGGACACAAGGGCGTACAGATTAAGTTGCTTGAAGGAAAGCAACGTCTTTGAAGTTGATTTTCCTGAAGTTTTGCAAGTGAAAACCACTCTTCTAAAGGCAGCAAAAGAATCTTCAAATGAACATCAGTATCTAACTGTCAAAGCAAAGTCGTTAACCAGAGTAGCAGCTGACCTCAGAGCAATTGACTGGCTTGAGAAGCTTCAAGTAGCAGGGTTTGTGCCAGAAAAAAACACGGTGTGGATTCTGGAAGGAATTCTCTACTATCTTTCACATTCACAAGCCATGCAAGTACTGACGACTATTGCTGACATGCGCACCATCACCCAAACAGTCCTCTTGGCAGATTTTATGAACAAACCATCAACAACACTTTCCAAATCTATTTACCACTTCTACAGTGATTGGCCTGATCATCTCCTGCCGTCTCTTGGCTATTCCAGTGTCACACTTTCACAGATTGGCGATCCTGATGCTAACTTTGGTCTCATGCATGATCCATTGAATCTGTTCAATAAACTTCGTCGCTTGCCAAGGTCAATACAAACCCACCCAGATGATGGCACACCTTGCAGCCGCTTATATCTGGTGCAGGCATGTGGTTCACCCAATTCATCAAATTCTGTAGAGAAAATCCACTAA 1026 44.93 MSDHENGSPEDFAWSELKLPQELFSDTVRDVHARIEAQWDDLQRSACQTAAGRALWNHVINDPLAGLLAGETYLRRIYEKIKKDRLNNAREISGVILAVRTLWFDSKLEDALNSFSGKDSQVVLLGAGMDTRAYRLSCLKESNVFEVDFPEVLQVKTTLLKAAKESSNEHQYLTVKAKSLTRVAADLRAIDWLEKLQVAGFVPEKNTVWILEGILYYLSHSQAMQVLTTIADMRTITQTVLLADFMNKPSTTLSKSIYHFYSDWPDHLLPSLGYSSVTLSQIGDPDANFGLMHDPLNLFNKLRRLPRSIQTHPDDGTPCSRLYLVQACGSPNSSNSVEKIH 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50812678 50814351 + Bda003748.1 Bda01g01492 1492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01492 341 TIGRFAM mthyl_TIGR00027: methyltransferase, TIGR00027 family 56 234 IPR011610 GO:0008168
Bda01g01492 341 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE YKTD-RELATED 16 311 - -
Bda01g01492 341 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 43 325 IPR029063 -
Bda01g01492 341 Pfam Leucine carboxyl methyltransferase 46 231 IPR007213 GO:0008168|GO:0032259
Bda01g01492 341 PANTHER LEUCINE CARBOXYL METHYLTRANSFERASE 16 311 - -
Bda01g01492 341 Gene3D Vaccinia Virus protein VP39 35 282 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01492 - - - jre:108982804 535.413
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g943 . . . . . . . . . Cmo12g00420 . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1340 Cone20ag0141 . . . . . Blo18g00816 . Bda01g01492 Bpe02g01688 . Bma01g00764 . . . . Cma12g00471 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014564 1 0 1 1 1 0 2 0 0 0 0 0 2 0 0 2 0 2 2 0 0 1 1 1 1 0 0 1 0 1 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01492 Bda_Chr01 FPKM 5.426318 6.563784 7.091623 6.309885 11.685936 10.164924 11.723605 5.755291 4.948126