Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01493 GGTCTTAATAAATTGCCCGCTTTTAATCCAATGGGTGATAGCAGTTGGGCAGTTGGGAGGGATGAGTTGTCGCATCTACATACTGTCTGCGGCGATGACAGGCAGGGGCCATGTGTATGGTCATCGTCAGAAGGAGGATGCAAGATTGATTTAGGGAAGCAGATCTTTTGCAACAGATCTTTGAATATGAAAAACATTGTTTCGATAGGCTTTGACATGGATTACACGTTGGCACAATACAAGCCTGAAACTTTTGAATCGCTTGCCTATGAAGGAACAATAAGAAAATTAGTATATGATTTGGGATATCCTCAAGAGCTGCTGGATTGGAAATTTGACTGGAAATACATGGTTAGAGGCTTGGTTCTTGATAAAAAGAGAGGCAACATCTTAAAGATGGATCGACACAAATATGTGAAAGTGGCTTATCATGGATTCAAAGAGTTGTCCAAGGAAGAAAAAGTTGGGACCTATGGGAATACCCTCGTACGAGATTCTTTTGACGAGCCTGATTATGCTCTCATTGATACTCTCTTTTCACTAGCTGAAACCTACTTGTTTGCACAATTGGTTGATTTTAAGGACAACAATCCATATAAAATTCTTGTTGGTGCCGATTACTCTCGTATGTATAAAGATGTTCGTGCTGCTGTTGATCTATGTCATCGAGATGGGACATTGAAGATCATGGTTGCCAAGGATCCTAAAAGGTATATTAATGAAGATACTGCAATAGTACCCATGTTGAAGATGATCAGGGATTCTGGTCGTTCAACTTTTTTGGTGACGAATAGTTTGTGGGACTATACAAATATCGTGATGAATTTTCTCTGTGGCTCCCGGACACTTGATGGTCATGAGAAATGCAACTTCGATTGGCTTCAGCATTTCGATGTTGTTATTACTGGCAGTGCCAAACCAAGCTTTTTCCATGAGGAAAATCGTGCCAATCTATTTGAGGTTGAGCCTGCGTCAGGGATGTTAATTAATACCGATAACGGCTCTCCTGTCCCACAGGTAGGAAATACTTTGCCATCTTTGTCGCTGAAGGGCCTGAATAAGAGTTGTAGGGTGTTCCAGGGTGGCAATGTCAGGCATCTGCATAAACTACTTTCTATTGAATCAAGTTCACAGGTTCTTTACGTTGGGGATCACATCTATGGAGATATATTGCGGAGCAAAAAGCTTCTTGCAGGATGGAGGACAATGCTTGTTGTTCCAGAGCTTGAGACAGAGGTTGAACTTCTCTGGGAACTGAGAGATACCCGCAAGCAACTTCAAACGTTGCGAACTGAACGATATATAACTGAAGACAGAATAGATCATTTGAAGTGGTCTCTCAAGTTTGAAGATGTCAGTGACGAAAAGAAACGGAGTTTATCTAACGAACTAGAATATTTGGAGTCTCAAAGGAAACAAGTGCGATTCTGTCATCAACAGGCTCAACGTAACTGCCACCAAAAGTTTCACAAGGTTTGGGGACAGCTCATGAAGACGGGTTATCAGAATTCTAGGTTTGCTCATCAGGTAGAGAGATTTGCCTGCCTGTACACTGGCCAAGTTACCAACTTAAGCCTCTACTCTCCAGATAAATACTACAGACCCAGCGAAGATTTCATGCCCCACGAATACGGTATAATTCCATTGTGA 1650 41.82 GLNKLPAFNPMGDSSWAVGRDELSHLHTVCGDDRQGPCVWSSSEGGCKIDLGKQIFCNRSLNMKNIVSIGFDMDYTLAQYKPETFESLAYEGTIRKLVYDLGYPQELLDWKFDWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFKELSKEEKVGTYGNTLVRDSFDEPDYALIDTLFSLAETYLFAQLVDFKDNNPYKILVGADYSRMYKDVRAAVDLCHRDGTLKIMVAKDPKRYINEDTAIVPMLKMIRDSGRSTFLVTNSLWDYTNIVMNFLCGSRTLDGHEKCNFDWLQHFDVVITGSAKPSFFHEENRANLFEVEPASGMLINTDNGSPVPQVGNTLPSLSLKGLNKSCRVFQGGNVRHLHKLLSIESSSQVLYVGDHIYGDILRSKKLLAGWRTMLVVPELETEVELLWELRDTRKQLQTLRTERYITEDRIDHLKWSLKFEDVSDEKKRSLSNELEYLESQRKQVRFCHQQAQRNCHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTGQVTNLSLYSPDKYYRPSEDFMPHEYGIIPL 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50818163 50825167 + Bda003749.1 Bda01g01493 1493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01493 549 PANTHER BNAA07G31970D PROTEIN 23 549 - -
Bda01g01493 549 Gene3D - 214 436 IPR023214 -
Bda01g01493 549 SUPERFAMILY HAD-like 53 545 IPR036412 -
Bda01g01493 549 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 55 426 IPR008380 -
Bda01g01493 549 PIRSF NT5C2 36 547 IPR016695 -
Bda01g01493 549 CDD HAD_cN-II 56 431 - -
Bda01g01493 549 Pfam 5' nucleotidase family 55 544 IPR008380 -
Bda01g01493 549 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 23 549 IPR008380 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01493 - - - jre:108982271 906.36
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01493 Bda03g00260 CCT
Bda01g01493 Bda08g01284 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01493 Bda-Chr1:50818163 Bda08g00343 Bda-Chr8:3496955 4.63E-62 dispersed
Bda01g01493 Bda-Chr1:50818163 Bda03g00260 Bda-Chr3:2317473 0 wgd
Bda01g01493 Bda-Chr1:50818163 Bda08g01284 Bda-Chr8:52130993 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01493 Bda_Chr01 FPKM 17.93235 19.469467 20.618362 20.301327 23.803244 22.862764 22.469879 25.353727 26.911999