Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01504 ATGGGCATCGGAAAGAGCAGAAAACTACCATGGAGACTGCCAACTGATGTCAAATTTTTCAAAGAGCTTACATTGGCAACAACTGATTCTGCAAAAAAGAATGCAGTTTTGATGGGTCGGAAAACATGGGAAAGTATTCCTCTTCCGTATCGGCCTTTACCCGGACGATTGAATATTGTGCTGACACGTTCTGCGAGTTTGGACATCAGAGCTTCTGAAAATGTTGTGATATGCAGAAGCATTCCATCAGCCCTGGAGCTATTATCCGAACCTCCATACTCTTTGTCGATGGAGAAAGTTTATGTCATAGGAGGTGGCCAGATATTGAGTGAAGCACTCAACGGTCCACGATGTGATGCTATCCACATTACTGAGATTGAGACGAGCATTGAATGCGACACGTTCATTCCTACTATCGATTTGTCAATATTCCGTCCCTGGTACTCTTCCATTCTATTGGTGGAAAACAATATTCGATACTCATTTGTGACTTATGTTCGGAAAGGCTTAACACCGGGCAGTGGGAACTTAGTTAACTCAAATAAGTTAAATGAATTTGCCTTCCTTCCGAAGTTGGTTGAAGAAATTATCTCCAGCAATGCCGAAAGATGA 612 42.32 MGIGKSRKLPWRLPTDVKFFKELTLATTDSAKKNAVLMGRKTWESIPLPYRPLPGRLNIVLTRSASLDIRASENVVICRSIPSALELLSEPPYSLSMEKVYVIGGGQILSEALNGPRCDAIHITEIETSIECDTFIPTIDLSIFRPWYSSILLVENNIRYSFVTYVRKGLTPGSGNLVNSNKLNEFAFLPKLVEEIISSNAER 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50900548 50901235 - Bda003761.1 Bda01g01504 1504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01504 203 Gene3D Dihydrofolate Reductase, subunit A 1 168 IPR024072 -
Bda01g01504 203 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 1 167 IPR001796 GO:0004146|GO:0046654
Bda01g01504 203 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 1 195 - -
Bda01g01504 203 CDD DHFR 1 166 IPR001796 GO:0004146|GO:0046654
Bda01g01504 203 PRINTS Dihydrofolate reductase signature 99 113 - -
Bda01g01504 203 PRINTS Dihydrofolate reductase signature 2 12 - -
Bda01g01504 203 PRINTS Dihydrofolate reductase signature 36 47 - -
Bda01g01504 203 PRINTS Dihydrofolate reductase signature 16 24 - -
Bda01g01504 203 Pfam Dihydrofolate reductase 2 167 IPR001796 GO:0004146|GO:0046654
Bda01g01504 203 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 2 24 IPR017925 GO:0004146
Bda01g01504 203 SUPERFAMILY Dihydrofolate reductase-like 1 168 IPR024072 -
Bda01g01504 203 PANTHER THYMIDYLATE SYNTHASE 1 1 195 IPR045097 GO:0016741
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01504 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - vvi:100255872 273.863
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01504 Bda-Chr1:50900548 Bda06g00999 Bda-Chr6:34604594 1.06E-84 dispersed
Bda01g01504 Bda-Chr1:50900548 Bda06g00992 Bda-Chr6:34094127 1.72E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g987 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0127 . . . . . . . Bda01g01504 Bpe02g01702 . Bma01g00752 . . . . . . . . . . . . . . . . . Cla11g00400 Cam11g0445 Cec11g0441 Cco11g0432 Clacu11g0569 Cmu11g0425 Cre11g0909 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016208 2 0 0 1 1 0 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01504 Bda_Chr01 FPKM 103.509521 116.506027 110.114723 112.308128 110.781532 108.534332 116.647614 110.391937 110.970436