Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01510 ATGGCCACTCCAGTTGAACCTCCTAATGGGATTGGATCCCCAGGGAAGCATTACTATTCAATGTGGCAAACTTTGTTCGAGATTGATACGAAATACATACCCATCAAGCCTATTGGTCGTGGGGCATATGGCATTGTATGCTCTTCTGTGAATAGGGAAAATAACGAGAAAGTTGCCATAAAAAGGATTAACAATGCTTTTGAGAATCGTATTGATGCCCTTAGAACTTTGCGCGAACTGAAGCTACTTAGGCACCTTCGGCATGAAAATGTGATTGCCTTGAAAGATGTTATGATGCCTATTCATCGGACAAGCTTTAAGGATGTCTATTTGGTTTATGAACTTATGGATACAGATCTTCATCAGATAATTAAGTCTCCTCAAGCCCTCTCCAATGATCATTGCCAGTATTTCCTGTTTCAGTTGCTTCGAGGTTTGAAATATTTGCATTCAGCTAACATTCTTCATCGTGACCTGAAGCCTGGAAACCTTCTTGTTAATGCAAACTGTGACCTTAAAATATGTGATTTTGGGTTAGCACGGACAAGCAAGGGCAAGAATCAATTTATGACTGAGTATGTTGTGACTCGCTGGTATCGAGCTCCAGAGCTTCTCCTTTGCTGTGACTATTATGGAACATCAATTGACGTATGGTCTGTGGGATGCATTTTTGCCGAGCTTCTTGGTAGAAAACCTATCTTCCCTGGTACTGAGTGTCTGAATCAGCTCAAACTGATTATAAACATCCTAGGCAGCCAGAGGGAGGAGGATCTGGAGTTTATAGACAATCCAAAAGCAAGAAAATACATCAAATCCCTTCCTCGCTCACTCGGAACCCCATTATCCCGTCTTTATCCCAATGCCAATCCTCTGGCTGTTGATCTACTGCAAAAAATGCTTATTTTCGACCCCTCAAAGCGGATTAGTGTGACTGATGCCCTCCAACACCCATACATGTCAGCCCTTTATGATCCAAATTCCAATCCTCCTGCTCAAGTACCACTTGATCTTGACATAGATGAGGAATTGGGAGAAGAAATGATAAGAGAGATGATGTGGTTGGAAATGCTACATTACCATCCTGAAGCTGTTGTGGCCATAGGAGAGGTGTGTTCCTAA 1119 42.27 MATPVEPPNGIGSPGKHYYSMWQTLFEIDTKYIPIKPIGRGAYGIVCSSVNRENNEKVAIKRINNAFENRIDALRTLRELKLLRHLRHENVIALKDVMMPIHRTSFKDVYLVYELMDTDLHQIIKSPQALSNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSKGKNQFMTEYVVTRWYRAPELLLCCDYYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNPKARKYIKSLPRSLGTPLSRLYPNANPLAVDLLQKMLIFDPSKRISVTDALQHPYMSALYDPNSNPPAQVPLDLDIDEELGEEMIREMMWLEMLHYHPEAVVAIGEVCS 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50947019 50949113 + Bda003767.1 Bda01g01510 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01510 372 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Bda01g01510 372 CDD STKc_TEY_MAPK 26 361 - -
Bda01g01510 372 Gene3D Phosphorylase Kinase; domain 1 19 353 - -
Bda01g01510 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Bda01g01510 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Bda01g01510 372 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Bda01g01510 372 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Bda01g01510 372 Pfam Protein kinase domain 35 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01510 372 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda01g01510 372 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Bda01g01510 372 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Bda01g01510 372 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01510 Bda-Chr1:50947019 Bda14g00998 Bda-Chr14:8368911 0 dispersed
Bda06g00259 Bda-Chr6:4471145 Bda01g01510 Bda-Chr1:50947019 6.00E-108 transposed
Bda11g01853 Bda-Chr11:53680783 Bda01g01510 Bda-Chr1:50947019 0 transposed
Bda14g00935 Bda-Chr14:7431224 Bda01g01510 Bda-Chr1:50947019 3.40E-111 transposed
Bda14g01085 Bda-Chr14:9588351 Bda01g01510 Bda-Chr1:50947019 3.53E-110 transposed
Bda01g01510 Bda-Chr1:50947019 Bda14g00997 Bda-Chr14:8181357 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69454 PF00069 Pkinase 1.20E-70 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01510 K20535 - cit:102623819 683.33