Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01513 ATGGTAAGCCATGACTCCCCTCCGAGCCCAGCTTCAAATATGCTTCACCAGTTCATAATCTCAGACTCTCTTTCTTCCCACACCCAATTTGGTCACCCACATTTTCATGCTTACGGCTCATTTCCTCAGCCACTTGGAGAAAGAATGTCTAGATCTACTGAGTTTGTTCAAGCTCCTCCAATGGCGGAGGAACCTCATATCAGCCACAGTGCTCATCTTATGGACCTTCTCGGAGCAACAAGCGAGGCCAGCCATCGTGTTCAAAGTCTCTCGCTTTCTCTCGGCTCTCAAATGGCGTTAAACTCCAATTTCATCACTCCAAATTACTTCGTCTGCGGAGAAAATGACAGAGAAATTGGCAATTTAGGAGCTGAACAACAATGTAATGAGAACTACTCTTTCATGGGTGGAGGAGCTTTTGCTTCATCTTCAACCTCTATGCATAGACATACAGAAAGTTTCGCTTCAGTTCTCGGCAATTCTCGATACCTTAAACCGGCTCAATCTCTCCTCGAAGAAATCGTCAGCGTTGGTGGCAAAAATGTTGACATAAACAATGAGTTCTATGGAGATAGAAGAGGAGCTCTCTGTTTATCTGCAGAATTAAGAGCAGAACTGTGCAGTAATCCTCCATTTTCAGTAGAAAAACATGAAAACCAGCTCCAAATCGCAAAGCTCATCTCCTTGTTGGAGGAGGTCGAGGGTCGATACGAGAAGTACTGCCATCAAATGGAAGGAGTCGCATCGTCGTTTGAAGCCATAGCCGGTTACGGATCAGCCAAGTCGTATACTGCACTTGCACTCCAAGCAATGTCTAGGCACTTCTTCAGCCTTAGAGATGCCATAATTTGTCAAATAAATCTCGAGAAAAGAAAACTTCTTCGTAGTTTGCCGAGAATTAGTGCTGGTTTTTCGCAGCTTAGCTTGTTCGATAGAGAAAGCCGGAGCAGCCGCATGACGCTTCAGCAGCTCGGAATGATTCACGGACAAAGACAAGCATGGAGGCCCATCAGAGGCTTACCGGAGACCTCTGTGACGATACTCCGGTCATGGCTTTTCGAGCATTTTCTCCATCCCTATCCAAATGACTCTGAAAAGCTAATGCTGGCTTCTCAAACTGGCCTCACCAAGAATCAAGTTTCAAACTGGTTTATAAACGCTCGGGTTCGATTGTGGAAGCCGATGATCGAGGAGATGTACAAAGAAGAATTCGGAGAATCTTCAGAGGACTCTAATCCATTAGCCGGTGGCTCAATTACAGGAGAAGGAGCTATTACAGATTATGCAGAGGATTAA 1296 45.37 MVSHDSPPSPASNMLHQFIISDSLSSHTQFGHPHFHAYGSFPQPLGERMSRSTEFVQAPPMAEEPHISHSAHLMDLLGATSEASHRVQSLSLSLGSQMALNSNFITPNYFVCGENDREIGNLGAEQQCNENYSFMGGGAFASSSTSMHRHTESFASVLGNSRYLKPAQSLLEEIVSVGGKNVDINNEFYGDRRGALCLSAELRAELCSNPPFSVEKHENQLQIAKLISLLEEVEGRYEKYCHQMEGVASSFEAIAGYGSAKSYTALALQAMSRHFFSLRDAIICQINLEKRKLLRSLPRISAGFSQLSLFDRESRSSRMTLQQLGMIHGQRQAWRPIRGLPETSVTILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPLAGGSITGEGAITDYAED 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50968677 50970229 - Bda003770.1 Bda01g01513 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01513 431 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 2 412 - -
Bda01g01513 431 SMART prehox3 152 284 IPR006563 -
Bda01g01513 431 Pfam Associated with HOX 157 282 IPR006563 -
Bda01g01513 431 ProSiteProfiles 'Homeobox' domain profile. 331 394 IPR001356 GO:0003677
Bda01g01513 431 CDD homeodomain 334 395 IPR001356 GO:0003677
Bda01g01513 431 Pfam Homeobox KN domain 351 390 IPR008422 GO:0003677|GO:0006355
Bda01g01513 431 Gene3D - 330 409 - -
Bda01g01513 431 MobiDBLite consensus disorder prediction 403 431 - -
Bda01g01513 431 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 412 - -
Bda01g01513 431 SMART HOX_1 334 398 IPR001356 GO:0003677
Bda01g01513 431 SUPERFAMILY Homeodomain-like 340 401 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01513 Bda03g00272 CCT
Bda01g01513 Bda03g00272 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01513 Bda-Chr1:50968677 Bda08g01259 Bda-Chr8:51315713 0 dispersed
Bda01g00515 Bda-Chr1:32123874 Bda01g01513 Bda-Chr1:50968677 4.01E-72 wgd
Bda01g01513 Bda-Chr1:50968677 Bda03g00272 Bda-Chr3:2397758 7.84E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15453 PF07526 POX 4.30E-37 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01513 - - vvi:100252354 534.258