Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01515 ATGACCCATTTTTTCTCCAGCTTTCTACTTCTGGTTCTCCTTCTCCTCTTGCATGATCCTTGTTTTTCTTCAACTCCAGTCATCTCCGAGCTCTTCGAAAACTGGTGTAGACACCATGGAAAAGGGTATTCTACAGAAGCAGAGAAACTTCACAGGCTCAAAGTGTTCGAAGATAACTATGCCTTCGTTAACAATCACAACGTTGGAAATTCTTCCTACTCCCTCTCTCTCAACGCGTTCGCCGATCTTACCCACCACGAGTTTAAGGCTTCTCGTTTGGGTCTTTCTGCTTCTGGGTTCGATTCTCAGCGTGTGCCACCAACTTCGCGTGAATCCAATCTGATTGTTGAAGTTCCTGCCTCAATTGATTGGAGAAAGGAAGGGGCAGTGACCCGTGTCAAGGATCAAGGAAGTTGCGGTGGGTGTTGGTCGTTTTCGGCGACCGGAGCTATTGAAGGAATCAATAAGATAGTCACTGGATCTCTTATTAGCCTTTCGGAACAAGAGTTGATTGATTGTGACCGATCCTATAACAGCGGATGCGAGGGTGGACTTATGGATTATGCATTTAAATTTATCATCGATAACAAAGGAATTGACACCGAAGAAGATTACCCCTTTCAAGCTCATGACAAGTCCTGCAATAAAGGAAAGCTGAATAGGCATGTTGTTACAGTTGATGGTTATACCGATGTGCCTTCAAACAACGAGAACGAGTTGCTCAAAGCCGTTGCGACCCAGCCTGGGATTTTCAGCGGTCCATGTTCGACTTCCTTGGATCATGCCGTGTTGATAGTAGGGTACGGAACAAAAAATGGAGCGGACTATTGGATCGTGAAGAACTCGTGGGGTCCTCATTGGGGGATGGAAGGCTATATTCACATGGAAAGAAACAGTAGGAATTCACATGGAGTTTGTGGTATAAACATGTTGGCTTCATATCCAACAAAGACGAGTCCAAATCCTCCTCCTCCGCCTGCTCCGGGTCCTACGAAATGTGATCTTCTTACTCACTGCCGAGAAGGGGAGACATGTTGTTGTTCAAAGCGATTTCTCGGAATTTGCCTCATGTGGAAATGCTGTGGGTTGGATTCTGCTATTTGCTGTGAAGACAGCCTCCATTGCTGTCCTCATGATTACCCCATTTGTGATATTAAGAGGAACTTATTCTGGGTCTATAAATTAAGCTTCATTCCGGTGTTGGAATTACAATCATTCAAAGCGAACGACCTAAGTAGAAGAACTCCAATGGCGGAAGAGGGACAGGTGATAGCTTGCCATTCTGTTAAATCCTGGGAGGAGCAGCTCGAGAAAGGAAAGGAAGGCAATAAACTGATTGTGGTGGATTTCACTGCTACCTGGTGCGGTCCATGCCGCACAATCGCCCCAATTTTTGCAGAGATGGCTAAGAAGATAACAAATGTCCTATTCTTGAAAGTGGACGTGGATGAATTGAGGACTGTTGCTGAGGAGTGGAATGTGGAGGCAATGCCAACCTTCATTTTTCTGAAGGATGGGAAATTGGTTGACCAAATAGTGGGTGCAAATAAGGAAGGGCTTCACCAGATGATATCAAAGCATGCTTGA 1587 45.31 MTHFFSSFLLLVLLLLLHDPCFSSTPVISELFENWCRHHGKGYSTEAEKLHRLKVFEDNYAFVNNHNVGNSSYSLSLNAFADLTHHEFKASRLGLSASGFDSQRVPPTSRESNLIVEVPASIDWRKEGAVTRVKDQGSCGGCWSFSATGAIEGINKIVTGSLISLSEQELIDCDRSYNSGCEGGLMDYAFKFIIDNKGIDTEEDYPFQAHDKSCNKGKLNRHVVTVDGYTDVPSNNENELLKAVATQPGIFSGPCSTSLDHAVLIVGYGTKNGADYWIVKNSWGPHWGMEGYIHMERNSRNSHGVCGINMLASYPTKTSPNPPPPPAPGPTKCDLLTHCREGETCCCSKRFLGICLMWKCCGLDSAICCEDSLHCCPHDYPICDIKRNLFWVYKLSFIPVLELQSFKANDLSRRTPMAEEGQVIACHSVKSWEEQLEKGKEGNKLIVVDFTATWCGPCRTIAPIFAEMAKKITNVLFLKVDVDELRTVAEEWNVEAMPTFIFLKDGKLVDQIVGANKEGLHQMISKHA 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 50998471 51004816 - Bda003773.1 Bda01g01515 1515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01515 528 SUPERFAMILY Cysteine proteinases 29 316 IPR038765 -
Bda01g01515 528 PANTHER OS05G0508300 PROTEIN 249 352 - -
Bda01g01515 528 PANTHER OS05G0508300 PROTEIN 18 248 - -
Bda01g01515 528 SMART pept_c1 118 316 IPR000668 GO:0006508|GO:0008234
Bda01g01515 528 CDD TRX_family 434 524 - -
Bda01g01515 528 SMART GRAN_2 333 387 IPR000118 -
Bda01g01515 528 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 276 295 IPR025661 -
Bda01g01515 528 Gene3D Cysteine proteinases 17 318 - -
Bda01g01515 528 SMART Inhibitor_I29_2 32 88 IPR013201 -
Bda01g01515 528 Pfam Thioredoxin 425 525 IPR013766 -
Bda01g01515 528 SUPERFAMILY Granulin repeat 330 363 - -
Bda01g01515 528 PRINTS Papain cysteine protease (C1) family signature 136 151 IPR000668 GO:0006508|GO:0008234
Bda01g01515 528 PRINTS Papain cysteine protease (C1) family signature 276 282 IPR000668 GO:0006508|GO:0008234
Bda01g01515 528 PRINTS Papain cysteine protease (C1) family signature 261 271 IPR000668 GO:0006508|GO:0008234
Bda01g01515 528 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 136 147 IPR000169 -
Bda01g01515 528 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 249 352 - -
Bda01g01515 528 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 18 248 - -
Bda01g01515 528 ProSiteProfiles Thioredoxin domain profile. 397 528 IPR013766 -
Bda01g01515 528 Pfam Cathepsin propeptide inhibitor domain (I29) 32 88 IPR013201 -
Bda01g01515 528 ProSitePatterns Thioredoxin family active site. 447 465 IPR017937 -
Bda01g01515 528 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 259 269 IPR025660 -
Bda01g01515 528 Gene3D Glutaredoxin 403 528 - -
Bda01g01515 528 CDD Peptidase_C1A 119 314 IPR039417 -
Bda01g01515 528 Pfam Papain family cysteine protease 118 315 IPR000668 GO:0006508|GO:0008234
Bda01g01515 528 Pfam Granulin 344 387 IPR000118 -
Bda01g01515 528 Gene3D Granulin 330 389 IPR037277 -
Bda01g01515 528 SUPERFAMILY Thioredoxin-like 417 527 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01515 - - - dzi:111312764 567.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g01515 Bda03g00202 CCT
Bda01g01515 Bda03g00202 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01096 Bda-Chr1:45727342 Bda01g01515 Bda-Chr1:50998471 8.55E-16 dispersed
Bda01g01515 Bda-Chr1:50998471 Bda03g00202 Bda-Chr3:1601024 1.11E-127 dispersed
Bda01g01671 Bda-Chr1:52824799 Bda01g01515 Bda-Chr1:50998471 9.64E-12 dispersed
Bda01g02019 Bda-Chr1:56527217 Bda01g01515 Bda-Chr1:50998471 1.01E-11 dispersed
Bda07g00970 Bda-Chr7:11579334 Bda01g01515 Bda-Chr1:50998471 1.79E-21 dispersed
Bda08g01190 Bda-Chr8:47980243 Bda01g01515 Bda-Chr1:50998471 6.98E-10 dispersed
Bda08g01269 Bda-Chr8:51804514 Bda01g01515 Bda-Chr1:50998471 3.34E-68 dispersed
Bda08g01273 Bda-Chr8:51880933 Bda01g01515 Bda-Chr1:50998471 3.34E-68 dispersed
Bda14g01105 Bda-Chr14:9958040 Bda01g01515 Bda-Chr1:50998471 6.19E-30 dispersed
Bda15g00557 Bda-Chr15:8687777 Bda01g01515 Bda-Chr1:50998471 3.76E-25 dispersed
Bda01g01515 Bda-Chr1:50998471 Bda14g01450 Bda-Chr14:19515801 4.06E-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
Vvi18g1017 . . . . . . . . Cmo05g00278 . Cma01g01935 Cma09g00130 Car01g01512 . . Cpe06g00089 . Bhi04g00210 . . . Hepe10g0603 . . Cla08g01455 Cam08g1940 Cec08g1514 Cco08g1653 Clacu08g1630 . Cre08g1416 Cone4ag1941 . . Cone20ag0114 Lsi04g01706 Csa03g04245 . Cme03g01918 . . . Bda01g01515 Bpe02g01711 . Bma01g00744 . . Cmo01g01998 Cmo09g00127 . Cma05g00273 Car05g00226 Car09g00116 Cpe11g00226 Cpe02g00101 . . . . . . . Cla05g01907 Cam05g2044 Cec05g2053 Cco05g2107 Clacu05g2036 Cmu05g1915 Cre05g2037 Lsi08g01361 Csa02g02094 Chy03g01421 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011861 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01515 Bda_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0