Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01518 ATGGCGGATTCTAGCTCTGCTCCGGCACGGAGAATGTGGTGTTCAGTGCCGGAAAAGATTCAACTGCACGGCGCTATGCTGGCGTTGCAGTTTGGCTATGCCGGATTTCACGTAGTTTCAAGATTTGCACTTAATATGGGCATCAGTAAACTCGTCTTCCCAGTTTACAGAAACATCATCGCTTTGATTCTTCTCGTTCCATTTGCATATTTCCTCGAAAAGAAGGAGCGGCCACCCATTTCTCTAAATTTCCTCCTCCAGTTCTTCTTCCTCGCCCTCGTTGGAATCACAGCAAATCAAGGATTCTACTTGCTGGGTTTAGACAATACCTCCCCAACTTTTGCATCTGCAATACAGAACTCCGTACCGGCCATCACTTTCCTCATGGCATTTTCTTTTTCTCATTTCAGGATAGAACAAGTGAGATTAAACAGAAAAGATGGAATAGCCAAAGTGCTCGGAACCATCTGTTGTGTGGCTGGAGCCACGGTAATAACCCTATACAAGGGGCCGACAATATATAGCCCATCAGCTTCGCTACAAACCACAAGAGCAGCAATGGCTATATCTCTTGGCGATGCTCAGGGAAAGAACTGGACTCTGGGCTGTGTCTATCTGATCGGCCATTGCCTGTCGTGGTCAGGTTGGCTCGTTTTGCAGGCGCCGGTTCTGAAAAAATACCCTGCTCGGCTTTCAGTCACTTCCTACACTTGCTTCTTTGGGCTGATACAGTTCGTCATTATAGCTGTTTCCGTCGAGAGAGATGCTCAGGCTTGGCTTTTCCACTCTGGAGGAGAAATCTTTAGCGTCTTATATGCAGGAATAGTGGCTTCTGGGATAGCATTTGCAGTTCAGATATGGTGCATTGACAGGGGTGGTCCAGTCTTCGTCGCTGTTTATCAACCTGTTCAAACTCTTGTTGTTGCGGTCATGGCTTCCATTGCTTTGGGAGAAGAGTTTTACTTGGGAGGGATCCTAGGAGCAGTGCTGATAATAGTGGGATTGTACTTCGTTCTTTGGGGTAAGAGCGAAGAGAGGAAATTCTTGCAGCAAAAGGCAGTGATTCAGTCCGGTCCGGAGCACGGTGGCAGCCGTTCTATCAGGACGCCACTCCTCCCGCCGGCAATGGCAACTGAAGATGTTTAA 1146 47.91 MADSSSAPARRMWCSVPEKIQLHGAMLALQFGYAGFHVVSRFALNMGISKLVFPVYRNIIALILLVPFAYFLEKKERPPISLNFLLQFFFLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAFSFSHFRIEQVRLNRKDGIAKVLGTICCVAGATVITLYKGPTIYSPSASLQTTRAAMAISLGDAQGKNWTLGCVYLIGHCLSWSGWLVLQAPVLKKYPARLSVTSYTCFFGLIQFVIIAVSVERDAQAWLFHSGGEIFSVLYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAVMASIALGEEFYLGGILGAVLIIVGLYFVLWGKSEERKFLQQKAVIQSGPEHGGSRSIRTPLLPPAMATEDV 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51015818 51017693 - Bda003775.1 Bda01g01518 1518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01518 381 PANTHER WAT1-RELATED PROTEIN 14 358 IPR030184 GO:0016021|GO:0022857
Bda01g01518 381 Pfam EamA-like transporter family 201 339 IPR000620 GO:0016020|GO:0016021
Bda01g01518 381 Pfam EamA-like transporter family 28 166 IPR000620 GO:0016020|GO:0016021
Bda01g01518 381 PANTHER WAT1-RELATED PROTEIN 14 358 - -
Bda01g01518 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 169 - -
Bda01g01518 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 258 344 - -
Bda01g01518 381 MobiDBLite consensus disorder prediction 358 381 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01518 - - - jre:108991375 607.446
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda01g00511 Bda01g01518 CCT
Bda01g00511 Bda01g01518 ECH
Bda01g01518 Bda01g00511 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01518 Bda-Chr1:51015818 Bda03g00845 Bda-Chr3:7300685 8.27E-79 dispersed
Bda08g00585 Bda-Chr8:5960587 Bda01g01518 Bda-Chr1:51015818 1.52E-34 dispersed
Bda01g00511 Bda-Chr1:32098394 Bda01g01518 Bda-Chr1:51015818 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1028 Blo01g01580 . Bda01g00511 . Bpe02g00369 . . Bma01g02344 Cmo05g00280 Cmo12g00386 . Cma09g00126 . Car12g00412 . Cpe06g00085 Cpe07g00390 Bhi04g00214 . . . Hepe10g0597 . . Cla08g01451 Cam08g1936 Cec08g1510 Cco08g1649 Clacu08g1626 . Cre08g1412 Cone4ag1945 Cone7ag1859 . Cone20ag0110 Lsi04g01711 Csa03g04250 Chy04g00454 Cme03g01914 . Blo18g00793 . Bda01g01518 Bpe02g01714 . Bma01g00742 . . . Cmo09g00123 Cma12g00435 Cma05g00275 Car05g00227 . Cpe11g00228 . . . . . . . . Cla05g01903 Cam05g2039 Cec05g2047 Cco05g2103 Clacu05g2031 Cmu05g1911 Cre05g2033 Lsi08g01356 Csa02g02098 Chy03g01417 Cme04g00502
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g00439 . 1 780 Nodulin-like Gene Family AT4G19180 55.3 5.3e-235 810.8
Bda07g00814 . 21 277 Nodulin-like Gene Family AT3G45870 67.3 2.1e-91 332.4
Bda09g00475 . 1 202 Nodulin-like Gene Family AT3G45870 67.3 7.0e-71 264.2
Bda14g01148 . 1 358 Nodulin-like Gene Family AT3G28050 61.6 7.7e-118 420.6
Bda08g00585 . 3 364 Nodulin-like Gene Family AT5G47470 59.8 2.6e-108 389.0
Bda07g00039 . 4 346 Nodulin-like Gene Family AT5G47470 50.3 1.1e-90 330.5
Bda14g01148 . 1 328 Nodulin-like Gene Family AT5G40230 57.7 2.1e-99 359.4
Bda14g01148 . 1 328 Nodulin-like Gene Family AT5G40240 56.2 2.3e-98 355.9
Bda01g00511 CCT,ECH 16 271 Nodulin-like Gene Family AT3G53210 62.9 2.9e-90 328.6
Bda01g01518 CCT,ECH 16 273 Nodulin-like Gene Family AT3G53210 59.6 8.9e-84 307.0
Bda14g00309 . 1093 1327 Nodulin-like Gene Family AT2G37450 55.7 3.4e-67 251.9
Bda15g00214 . 65 299 Nodulin-like Gene Family AT2G37450 52.3 1.4e-65 246.5
Bda03g00533 CCT 98 334 Nodulin-like Gene Family AT2G37450 51.9 3.5e-64 241.9
Bda14g00309 . 1008 1327 Nodulin-like Gene Family AT2G37460 59.1 2.8e-102 369.0
Bda03g00533 CCT 4 356 Nodulin-like Gene Family AT2G37460 51.8 1.1e-98 357.1
Bda13g01485 CCT 1 314 Nodulin-like Gene Family AT2G37460 51.3 1.9e-87 319.7
Bda01g00511 CCT,ECH 1 386 Nodulin-like Gene Family AT1G75500 76.6 2.6e-164 575.1
Bda01g01518 CCT,ECH 1 372 Nodulin-like Gene Family AT1G75500 71.3 7.1e-146 513.8
Bda14g00309 . 1001 1355 Nodulin-like Gene Family AT5G13670 50.3 2.7e-94 342.4
Bda14g00309 . 1004 1336 Nodulin-like Gene Family AT2G39510 66.1 1.1e-122 436.8
Bda15g00214 . 14 300 Nodulin-like Gene Family AT2G39510 57.5 9.7e-100 360.5
Bda03g00533 CCT 8 351 Nodulin-like Gene Family AT2G39510 53.9 3.7e-99 358.6
Bda13g01485 CCT 1 339 Nodulin-like Gene Family AT2G39510 51.0 1.1e-90 330.5
Bda15g00113 . 11 343 Nodulin-like Gene Family AT2G39510 50.6 1.8e-90 329.7
Bda14g01148 . 4 335 Nodulin-like Gene Family AT4G15540 51.9 4.3e-94 341.7
Bda13g01485 CCT 1 241 Nodulin-like Gene Family AT4G08290 65.4 6.2e-83 304.3
Bda03g00533 CCT 3 354 Nodulin-like Gene Family AT4G08300 63.0 1.1e-116 416.8
Bda13g01485 CCT 2 342 Nodulin-like Gene Family AT4G08300 51.9 5.1e-93 338.2
Bda14g00309 . 1008 1327 Nodulin-like Gene Family AT4G08300 50.3 6.9e-82 301.2
Bda10g00347 BCT 1 254 Nodulin-like Gene Family AT5G64700 62.4 1.7e-79 292.7
Bda10g00361 . 1 256 Nodulin-like Gene Family AT5G64700 51.3 1.4e-65 246.5
Bda10g00365 . 1 255 Nodulin-like Gene Family AT5G64700 50.4 2.4e-65 245.7
Bda14g00333 . 9 412 Nodulin-like Gene Family AT5G07050 66.2 1.4e-144 509.6
Bda15g00113 . 1 405 Nodulin-like Gene Family AT5G07050 65.0 1.4e-141 499.6
Bda03g01511 . 1 441 Nodulin-like Gene Family AT5G07050 55.9 6.7e-123 437.6
Bda03g00533 CCT 6 334 Nodulin-like Gene Family AT5G07050 53.7 2.7e-100 362.5
Bda14g00309 . 1008 1327 Nodulin-like Gene Family AT5G07050 53.8 2.0e-90 329.7
Bda14g00333 . 20 360 Nodulin-like Gene Family AT3G56620 54.3 1.4e-98 356.7
Bda15g00113 . 12 380 Nodulin-like Gene Family AT3G56620 51.3 3.8e-96 348.6
Bda01g02231 . 9 356 Nodulin-like Gene Family AT1G70260 52.1 9.4e-103 370.5
Bda12g01113 . 9 329 Nodulin-like Gene Family AT1G09380 63.7 3.9e-117 418.3
Bda15g00113 . 12 402 Nodulin-like Gene Family AT2G40900 50.4 9.8e-103 370.5
Bda14g00333 . 20 392 Nodulin-like Gene Family AT2G40900 52.5 4.9e-102 368.2
Bda01g00511 CCT,ECH 16 351 Nodulin-like Gene Family AT3G18200 61.0 1.9e-114 409.5
Bda01g01518 CCT,ECH 16 347 Nodulin-like Gene Family AT3G18200 56.6 5.2e-101 364.8
Bda03g00533 CCT 3 352 Nodulin-like Gene Family AT1G44800 60.5 3.6e-115 411.8
Bda13g01485 CCT 2 336 Nodulin-like Gene Family AT1G44800 52.7 4.9e-96 348.2
Bda14g00309 . 1008 1327 Nodulin-like Gene Family AT1G44800 50.6 5.6e-84 308.1
Bda09g00475 . 26 299 Nodulin-like Gene Family AT5G45370 69.1 2.8e-104 375.2
Bda07g00814 . 108 277 Nodulin-like Gene Family AT5G45370 64.1 6.2e-59 224.6
Bda03g00533 CCT 3 310 Nodulin-like Gene Family AT1G21890 65.1 4.2e-113 404.8
Bda13g01485 CCT 1 291 Nodulin-like Gene Family AT1G21890 51.8 1.6e-85 313.2
Bda15g00113 . 9 321 Nodulin-like Gene Family AT1G21890 50.2 4.2e-81 298.5
Bda12g00609 . 1 562 Nodulin-like Gene Family AT1G80530 59.0 4.1e-187 651.4
Bda01g01944 . 5 571 Nodulin-like Gene Family AT1G80530 57.9 4.7e-183 637.9
Bda01g01946 . 5 571 Nodulin-like Gene Family AT1G80530 57.9 4.7e-183 637.9
Bda06g00170 . 1 370 Nodulin-like Gene Family AT4G19450 63.5 7.6e-130 460.7
Bda06g00558 . 1 364 Nodulin-like Gene Family AT1G74780 58.2 3.0e-110 396.0
Bda06g00482 . 11 542 Nodulin-like Gene Family AT4G34950 69.8 1.3e-220 762.7
Bda15g00676 . 7 579 Nodulin-like Gene Family AT5G14120 63.4 2.0e-200 695.7
Bda06g00482 . 10 388 Nodulin-like Gene Family AT2G16660 71.1 2.1e-153 538.9
Bda14g00054 . 1 531 Nodulin-like Gene Family AT2G39210 66.5 3.5e-200 694.9
Bda15g00152 . 1 367 Nodulin-like Gene Family AT2G39210 58.9 1.1e-113 407.5
Bda15g00676 . 7 434 Nodulin-like Gene Family AT3G01930 63.3 6.1e-146 514.2
Bda06g00558 . 1 360 Nodulin-like Gene Family AT1G18940 52.8 2.0e-103 373.2
Bda15g00676 . 14 580 Nodulin-like Gene Family AT5G50520 51.0 2.1e-151 532.7
Bda15g00676 . 14 580 Nodulin-like Gene Family AT5G50630 51.0 2.1e-151 532.7
Bda06g00558 . 1 367 Nodulin-like Gene Family AT2G34350 52.0 5.3e-96 348.6
Bda14g00054 . 1 536 Nodulin-like Gene Family AT2G28120 59.2 1.7e-175 612.8
Bda02g00734 . 17 442 Nodulin-like Gene Family AT2G28120 53.8 2.1e-154 542.7
Bda15g00152 . 1 356 Nodulin-like Gene Family AT2G28120 53.7 2.5e-94 343.2
Bda06g00170 . 1 370 Nodulin-like Gene Family AT1G31470 52.7 5.3e-97 352.1
Bda03g00386 . 27 232 Nodulin-like Gene Family AT1G76800 64.7 2.2e-63 238.8
Bda13g01411 . 2 212 Nodulin-like Gene Family AT1G76800 61.1 1.1e-59 226.5
Bda14g01476 . 30 214 Nodulin-like Gene Family AT1G76800 64.9 4.3e-59 224.6
Bda14g01495 . 33 227 Nodulin-like Gene Family AT1G76800 60.5 5.5e-54 207.6
Bda15g00816 . 40 227 Nodulin-like Gene Family AT1G76800 60.1 1.8e-52 202.6
Bda15g00831 . 36 187 Nodulin-like Gene Family AT1G76800 69.7 4.1e-49 191.4
Bda01g00875 . 1 166 Nodulin-like Gene Family AT1G76800 62.7 6.5e-47 184.1
Bda14g01495 . 34 229 Nodulin-like Gene Family AT3G25190 63.1 3.1e-58 221.9
Bda15g00816 . 39 229 Nodulin-like Gene Family AT3G25190 62.2 5.6e-55 211.1
Bda13g01411 . 19 213 Nodulin-like Gene Family AT3G25190 55.8 1.5e-52 203.0
Bda14g01476 . 34 216 Nodulin-like Gene Family AT3G25190 58.1 7.5e-52 200.7
Bda03g00386 . 35 237 Nodulin-like Gene Family AT3G25190 55.2 1.4e-50 196.4
Bda01g00875 . 1 167 Nodulin-like Gene Family AT3G25190 59.9 7.5e-44 174.1
Bda15g00831 . 34 185 Nodulin-like Gene Family AT3G25190 63.1 3.7e-43 171.8
Bda03g00386 . 20 236 Nodulin-like Gene Family AT1G21140 63.9 5.2e-68 254.2
Bda13g01411 . 6 212 Nodulin-like Gene Family AT1G21140 63.0 5.1e-63 237.7
Bda14g01476 . 27 216 Nodulin-like Gene Family AT1G21140 66.5 4.3e-62 234.6
Bda14g01495 . 35 227 Nodulin-like Gene Family AT1G21140 60.6 4.6e-56 214.5
Bda15g00816 . 31 227 Nodulin-like Gene Family AT1G21140 59.9 5.1e-55 211.1
Bda01g00875 . 1 166 Nodulin-like Gene Family AT1G21140 65.7 1.8e-52 202.6
Bda15g00831 . 27 187 Nodulin-like Gene Family AT1G21140 65.2 3.2e-49 191.8
Bda03g00386 . 25 235 Nodulin-like Gene Family AT3G43630 65.7 1.3e-66 249.6
Bda13g01411 . 1 209 Nodulin-like Gene Family AT3G43630 63.8 1.1e-62 236.5
Bda14g01476 . 27 216 Nodulin-like Gene Family AT3G43630 68.1 3.6e-61 231.5
Bda14g01495 . 35 224 Nodulin-like Gene Family AT3G43630 61.1 3.3e-54 208.4
Bda15g00816 . 31 224 Nodulin-like Gene Family AT3G43630 59.8 3.6e-53 204.9
Bda01g00875 . 1 165 Nodulin-like Gene Family AT3G43630 66.1 3.8e-50 194.9
Bda15g00831 . 27 187 Nodulin-like Gene Family AT3G43630 65.2 2.1e-48 189.1
Bda03g00386 . 25 236 Nodulin-like Gene Family AT3G43660 64.0 1.8e-65 245.7
Bda13g01411 . 8 212 Nodulin-like Gene Family AT3G43660 63.4 2.8e-61 231.9
Bda14g01476 . 27 214 Nodulin-like Gene Family AT3G43660 67.0 9.8e-59 223.4
Bda15g00816 . 31 227 Nodulin-like Gene Family AT3G43660 60.4 5.9e-56 214.2
Bda14g01495 . 32 227 Nodulin-like Gene Family AT3G43660 59.7 3.8e-55 211.5
Bda01g00875 . 1 166 Nodulin-like Gene Family AT3G43660 66.3 1.2e-51 199.9
Bda15g00831 . 27 187 Nodulin-like Gene Family AT3G43660 64.0 7.8e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002368 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 1 2 3 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda01g01518 Bda_Chr01 FPKM 55.19006 57.10257 43.013054 43.148502 49.806519 46.39642 46.39539 67.666481 71.072701