Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda01g01519 | ATGGCTGGATTTTTCTATCTAGGCGGGAGAGATCAAGATCTACGAAACAAAGAAAAGGAAGACGGAGAAGAAGAAGAAGATCAGAGAGCACAAAACTTATACTTGTACAGACAAGAAGAGATCTACAACAAGGGTTTCGAGATATGGCCTCAGTACAATCAGCAAAACACGAGCAACTACCTGTCTTTCGGTGTGGGTCCCAGCCAAAGAAACTTCATGAACGTCTCTGATCATGATTTATCAAGATCAGGCGGCGGCAGCAGCGGAGGAGGAGGGATGAATTGCCAAGACTGTGGAAATCAAGCTAAGAAAGACTGCTCTTATTTGAGGTGCAGAACTTGCTGTAAAAGCAGAGGTTTTCAATGTCAAACCCACGTGAAAAGCACTTGGGTTCCGGCTGCCAAACGGCGGGAGAGGCAGCAGCAGCTGGCGGCTTTGCATCAAGGGCCGTCGCAACCTAGGACGGGAGAGAATACGAAAAGGCTCAAGGACTTGAACGTGGCCTCTTCTTCTTCTCTTGCCTGCGCTCGGTTAGAGCTGACGGAGTTTCCAGCTGATGTGAATTCCCCAGCTGTCTTTCGCTGCGTGAAAGTCCGTGCAATGGACGATGAAGAAGAACAGTTTGCATATCAGACGGCGGTAACCATCGGCGGCCATGTCTTCAAAGGAATTCTCTACGATCAAGGGCATGAAAGTCGTTACACCGGCGGAGGCGGGGAAAACTCCTTCGGCCAAGGCGGTGATGAAGCCCGGCAACTTAACCTTATTACTGGACCCTCTGACACCATACCCACCACAACTACTAGTAATCTTTCTGCTACATTGCTCGACTCTTCTCTATATCCAGCTCCTCTTACTGCATTCATAGCTGGCACGCAGTTCTTCCCACCTTCCCGGCCATGA | 903 | 49.61 | MAGFFYLGGRDQDLRNKEKEDGEEEEDQRAQNLYLYRQEEIYNKGFEIWPQYNQQNTSNYLSFGVGPSQRNFMNVSDHDLSRSGGGSSGGGGMNCQDCGNQAKKDCSYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALHQGPSQPRTGENTKRLKDLNVASSSSLACARLELTEFPADVNSPAVFRCVKVRAMDDEEEQFAYQTAVTIGGHVFKGILYDQGHESRYTGGGGENSFGQGGDEARQLNLITGPSDTIPTTTTSNLSATLLDSSLYPAPLTAFIAGTQFFPPSRP | 300 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 51050589 | 51051966 | - | Bda003778.1 | Bda01g01519 | 1519 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda01g01519 | 300 | MobiDBLite | consensus disorder prediction | 11 | 29 | - | - | |
| Bda01g01519 | 300 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 297 | IPR007818 | GO:0003700|GO:0006355 | |
| Bda01g01519 | 300 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 94 | 136 | IPR006510 | - | |
| Bda01g01519 | 300 | Pfam | Domain of unknown function (DUF702) | 92 | 231 | - | - | |
| Bda01g01519 | 300 | MobiDBLite | consensus disorder prediction | 144 | 158 | - | - | |
| Bda01g01519 | 300 | MobiDBLite | consensus disorder prediction | 137 | 158 | - | - | |
| Bda01g01519 | 300 | PANTHER | PROTEIN SHI RELATED SEQUENCE 7 | 1 | 297 | - | - | |
| Bda01g01519 | 300 | MobiDBLite | consensus disorder prediction | 7 | 29 | - | - | |
| Bda01g01519 | 300 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 183 | 229 | IPR006511 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda01g01519 | Bda03g00274 | CCT | |
| Bda01g00510 | Bda01g01519 | CCT | |
| Bda01g01519 | Bda03g00274 | ECH | |
| Bda01g01519 | Bda01g00510 | ECH | |
| Bda01g00510 | Bda01g01519 | ECH | |
| Bda01g01519 | Bda08g01246 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g01519 | Bda-Chr1:51050589 | Bda10g00166 | Bda-Chr10:4910528 | 4.12E-84 | dispersed | |
| Bda01g00510 | Bda-Chr1:32082199 | Bda01g01519 | Bda-Chr1:51050589 | 4.03E-116 | wgd | |
| Bda01g01519 | Bda-Chr1:51050589 | Bda14g00993 | Bda-Chr14:8140463 | 4.52E-65 | wgd | |
| Bda01g01519 | Bda-Chr1:51050589 | Bda03g00274 | Bda-Chr3:2407882 | 3.45E-116 | wgd | |
| Bda01g01519 | Bda-Chr1:51050589 | Bda08g01246 | Bda-Chr8:50963196 | 2.19E-170 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 15454 | PF05142 | DUF702 | 1.70E-62 | No_clan | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda01g01519 | - | - | jre:108991308 | 358.607 |