Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda01g01521 ATGAAGATCCAGTGCGACGTCTGTAACAGAGACGAAGCCTCTGTTTTCTGTGTCGCCGACGAAGCCGCCATTTGCGCCGCTTGCGACCACCTTGTCCACCACGCAAACAAGCTCGCTTCGAAACACCACCGATTTTCTCTTCTCCACCCTTGTGCAAACCAATTCACTCCTTGCGATGTCTGCCAAGAGAGAAGAGCTTTTTTGTTTTGTCAGCAGGACAGAGCGATGCTTTGCAGAGACTGCGACTTTCAGATTCATAGCGCTAACGAGCACACAAAAAAGCATGATAGGTTTCTTCTTACTGGGATCAAGCTTTCTGCGACGTCTGATTTATATGCACAATCTAAACCAGCTTTAACCAAGGGTGATGGTAGCGTCGTTGTTCCCGATCTAAAATTAAACCCCATGGTCAAGAAGTCCGCTTCTGCTTCATCTGCAGTGTCGAAACCGGAATCTTTGAGTGAAAGTTCATCAACTTTACCTCTTGTTCTGCCTATTAATAAGGGCGGTGAGGAAGATTGGAAAGCTAATGGAGGGGATGACTTGGCTAGTAGCATATCAGAGTATTTGATCGAGACACTTCCTGGTTGGCACGTTGAAGATCTTCTGGATTCATCTCCTCCTTTTGGTTTCTGTAAGACGGATGATGATTCCACTCTTCCAATCATGGACGATGAACTTGAAAACAGTCTAAGGGTCTTTTGGGTGCCTCAGGCAGCATCCTCTTTGCAACCTGCAGAAATGACGAGTGGGGAAAATGTCTTCACCGAATCAGAAGAATCAAACATAAAAGCAAACAGAGGAGGGTGGATAGACGATGGCTTCACAGTCCCACAAATCTGCCCTTCATCTTCTGGTCTCAAGAGATCCAGGCCATTTTGGTAG 885 46.44 MKIQCDVCNRDEASVFCVADEAAICAACDHLVHHANKLASKHHRFSLLHPCANQFTPCDVCQERRAFLFCQQDRAMLCRDCDFQIHSANEHTKKHDRFLLTGIKLSATSDLYAQSKPALTKGDGSVVVPDLKLNPMVKKSASASSAVSKPESLSESSSTLPLVLPINKGGEEDWKANGGDDLASSISEYLIETLPGWHVEDLLDSSPPFGFCKTDDDSTLPIMDDELENSLRVFWVPQAASSLQPAEMTSGENVFTESEESNIKANRGGWIDDGFTVPQICPSSSGLKRSRPFW 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 51110063 51111194 + Bda003780.1 Bda01g01521 1521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda01g01521 294 CDD Bbox1_BBX-like 57 100 - -
Bda01g01521 294 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda01g01521 294 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Bda01g01521 294 Pfam B-box zinc finger 55 93 IPR000315 GO:0008270
Bda01g01521 294 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 292 - -
Bda01g01521 294 CDD Bbox1_BBX-like 5 47 - -
Bda01g01521 294 Gene3D Classic Zinc Finger 1 97 - -
Bda01g01521 294 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bda01g01521 294 SMART bboxneu5 53 100 IPR000315 GO:0008270
Bda01g01521 294 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 292 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00506 Bda01g01521 CCT
Bda01g00506 Bda01g01521 ECH
Bda01g01521 Bda01g00506 ECH
Bda01g01521 Bda08g01236 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01521 Bda-Chr1:51110063 Bda08g00955 Bda-Chr8:18590465 5.12E-63 dispersed
Bda01g00506 Bda-Chr1:32057229 Bda01g01521 Bda-Chr1:51110063 1.53E-71 wgd
Bda01g01521 Bda-Chr1:51110063 Bda14g00574 Bda-Chr14:4384124 2.19E-65 wgd
Bda01g01521 Bda-Chr1:51110063 Bda14g00989 Bda-Chr14:8030086 1.90E-20 wgd
Bda01g01521 Bda-Chr1:51110063 Bda08g01236 Bda-Chr8:50639497 2.45E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15455 PF00643 zf-B_box 2.20E-06 No_clan Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda01g01521 - - zju:107420377 317.39